GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
         (210 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-274|AAF51354.3|  230|Drosophila melanogaster CG7361-PB,...   221   4e-58
AE014134-273|AAF51353.1|  260|Drosophila melanogaster CG7361-PA,...   100   3e-21
BT010222-1|AAQ23540.1|  260|Drosophila melanogaster RH01528p pro...    97   2e-20
AE013599-2064|AAF58132.1|  491|Drosophila melanogaster CG12960-P...    29   6.2  

>AE014134-274|AAF51354.3|  230|Drosophila melanogaster CG7361-PB,
           isoform B protein.
          Length = 230

 Score =  221 bits (541), Expect = 4e-58
 Identities = 100/196 (51%), Positives = 132/196 (67%), Gaps = 2/196 (1%)

Query: 15  HRDIEFPNFNPYRKDQYKDVRKTRWGAGDEKSGVTYTIGFFGLLCGSYAVKSELVHFISY 74
           H D++ P+F+ YR++  KD R+ R    +E+   +Y +   G + G+YA K  +  FI  
Sbjct: 37  HTDLQVPDFSAYRRESVKDSRR-RNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGS 95

Query: 75  MXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPE 134
           M           IE+ L+ I  G  V++KWRGKPLFI+ RT A+I+ E   P S LRDPE
Sbjct: 96  MSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTSTLRDPE 155

Query: 135 TPEQRTTIPEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNL 194
             +QR   PEWL+VIG+CTHLGCVPIANAGD+ GG+YCPCHGSHYD  GR RKGPAPLNL
Sbjct: 156 ADDQRVIKPEWLVVIGVCTHLGCVPIANAGDW-GGYYCPCHGSHYDASGRIRKGPAPLNL 214

Query: 195 EVPPYKFVSDSLVIVG 210
           EVP ++F ++ L++VG
Sbjct: 215 EVPTHEFPNEGLLVVG 230


>AE014134-273|AAF51353.1|  260|Drosophila melanogaster CG7361-PA,
           isoform A protein.
          Length = 260

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 15  HRDIEFPNFNPYRKDQYKDVRKTRWGAGDEKSGVTYTIGFFGLLCGSYAVKSELVHFISY 74
           H D++ P+F+ YR++  KD R+ R    +E+   +Y +   G + G+YA K  +  FI  
Sbjct: 37  HTDLQVPDFSAYRRESVKDSRR-RNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGS 95

Query: 75  MXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPE 134
           M           IE+ L+ I  G  V++KWRGKPLFI+ RT A+I+ E   P S LRDPE
Sbjct: 96  MSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTSTLRDPE 155

Query: 135 TPEQRTTIPEWL 146
             +  T   EW+
Sbjct: 156 ADDVGTV--EWV 165


>BT010222-1|AAQ23540.1|  260|Drosophila melanogaster RH01528p
           protein.
          Length = 260

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 15  HRDIEFPNFNPYRKDQYKDVRKTRWGAGDEKSGVTYTIGFFGLLCGSYAVKSELVHFISY 74
           H D++ P+F+ YR++  KD R+ R    +E+   +Y +   G + G+YA K  +  FI  
Sbjct: 37  HTDLQVPDFSAYRRESVKDSRR-RNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGS 95

Query: 75  MXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPE 134
           M           IE+ L+ I  G  V++KWRGKPLFI+  T A+I+ E   P S LRDPE
Sbjct: 96  MSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHSTAAEIETERNVPTSTLRDPE 155

Query: 135 TPEQRTTIPEWL 146
             +  T   EW+
Sbjct: 156 ADDVGTV--EWV 165


>AE013599-2064|AAF58132.1|  491|Drosophila melanogaster CG12960-PA
           protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 43  DEKSGVTYTIGFFGLLCGSYAVK-SELVHFI 72
           DEKSG T  +G+ G +  +YA K +  +HFI
Sbjct: 97  DEKSGETKMMGYLGHMINTYAQKLNAKLHFI 127


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,497
Number of Sequences: 52641
Number of extensions: 464308
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 24,830,863
effective HSP length: 82
effective length of query: 128
effective length of database: 20,514,301
effective search space: 2625830528
effective search space used: 2625830528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)