GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
         (210 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   184   3e-47
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   5.7  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    27   9.9  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    27   9.9  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    27   9.9  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  184 bits (449), Expect = 3e-47
 Identities = 84/197 (42%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 15  HRDIEFPNFNPYRKDQYKDVRKTRWGAGDEKSGVTYTIGF-FGLLCGSYAVKSELVHFIS 73
           H D+ FP+ + YR+D  K+ +       D++  +   + +  G +   +A K  +   +S
Sbjct: 80  HTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTALYYGAGGVLSLWAGKEVVQTLVS 139

Query: 74  YMXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDP 133
           Y           SIE+++  I  G   +++WRGKP+F+K RT+A+I  E   P++ LR P
Sbjct: 140 YKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVFVKHRTKAEIAKEKAVPVADLRHP 199

Query: 134 ETPEQRTTIPEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLN 193
           +  ++R    EW +VIG+CTHLGCVPIA+AGDY GG+YCPCHGSHYD  GR RKGPAPLN
Sbjct: 200 QHDDERVQKDEWSVVIGVCTHLGCVPIADAGDY-GGYYCPCHGSHYDASGRIRKGPAPLN 258

Query: 194 LEVPPYKFVSDSLVIVG 210
           L VP Y F  D+ +++G
Sbjct: 259 LHVPAYSF-KDATIVIG 274


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 100 VSYKWRGKPLFIKRRTQADIDIEAKTPLSVLRDPET-PEQRTTIPEWLIVIGICTHLGCV 158
           +SY+ +   +F K R +A +   + TP +    P T PEQ+   P     I  C  +GC+
Sbjct: 90  MSYQLQKMVVFPKVRKEALMPTSSPTPGTSAYTPITVPEQQKRAPTRTAKILSCCRIGCI 149

Query: 159 PIA 161
            +A
Sbjct: 150 TLA 152


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 171 YCPCHGSHYDNVGRARKGPAPLNLEVPPYKFVSDS 205
           Y P HGS+YDN GR    PA      PP +  S S
Sbjct: 152 YRPPHGSNYDNYGRE---PASSRRPYPPQQPPSTS 183


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 2   WVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 46
           W +    KE    HR   + EFP     R+D+ +  R  R    DEKS
Sbjct: 113 WEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 2   WVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 46
           W +    KE    HR   + EFP     R+D+ +  R  R    DEKS
Sbjct: 113 WEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 2   WVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 46
           W +    KE    HR   + EFP     R+D+ +  R  R    DEKS
Sbjct: 113 WEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,647,383
Number of Sequences: 27539
Number of extensions: 237407
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 12,573,161
effective HSP length: 78
effective length of query: 132
effective length of database: 10,425,119
effective search space: 1376115708
effective search space used: 1376115708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)