Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000732-TA|BGIBMGA000732-PA|IPR006317|Ubiquinol-
cytochrome c reductase, iron-sulfur subunit, IPR004192|Ubiquinol
cytochrome reductase transmembrane region, IPR005806|Rieske [2Fe-2S]
region, IPR005805|Rieske iron-sulfur protein
(210 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s... 181 4e-46
At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s... 180 5e-46
At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur sub... 55 3e-08
At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur sub... 55 3e-08
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 29 2.3
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 29 2.3
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 29 2.3
At5g51300.2 68418.m06360 splicing factor-related contains simila... 27 9.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 27 9.3
>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
Length = 274
Score = 181 bits (440), Expect = 4e-46
Identities = 88/208 (42%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 4 QVRYHKECPRLHRDIEFPNFNPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSY 62
++ + E P ++ PN K Y D R+ GD K Y + G +
Sbjct: 72 EIGFGSEVPATVEAVKTPN----SKIVYDDHNHERYPPGDPSKRAFAYFVLSGGRFVYAS 127
Query: 63 AVKSELVHFISYMXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIE 122
++ ++ I M S+EVDL I PG V+ KWRGKP+FI+RRT+ DI +
Sbjct: 128 VLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLA 187
Query: 123 AKTPLSVLRDPETPEQRTTIPEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNV 182
+ LRDP+ R PEWLIV+G+CTHLGC+P+ NAGDY GG++CPCHGSHYD
Sbjct: 188 NSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDY-GGWFCPCHGSHYDIS 246
Query: 183 GRARKGPAPLNLEVPPYKFVSDSLVIVG 210
GR RKGPAP NLEVP Y F+ ++ +++G
Sbjct: 247 GRIRKGPAPYNLEVPTYSFLEENKLLIG 274
>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
non-consensus AT acceptor splice site at exon 2
Length = 272
Score = 180 bits (439), Expect = 5e-46
Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 4 QVRYHKECPRLHRDIEFPNFNPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSY 62
++ + E P ++ PN K Y D R+ GD K Y + G +
Sbjct: 70 EIGFGSEVPATVEAVKTPN----SKIVYDDHNHERYPPGDPSKRAFAYFVLSGGRFVYAS 125
Query: 63 AVKSELVHFISYMXXXXXXXXXXSIEVDLTKITPGACVSYKWRGKPLFIKRRTQADIDIE 122
++ ++ I M S+EVDL I PG V+ KWRGKP+FI+RRT+ DI +
Sbjct: 126 VLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIKLA 185
Query: 123 AKTPLSVLRDPETPEQRTTIPEWLIVIGICTHLGCVPIANAGDYPGGFYCPCHGSHYDNV 182
+ LRDP+ R PEWL+V+G+CTHLGC+P+ NAGDY GG++CPCHGSHYD
Sbjct: 186 NSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDY-GGWFCPCHGSHYDIS 244
Query: 183 GRARKGPAPLNLEVPPYKFVSDSLVIVG 210
GR RKGPAP NLEVP Y F+ ++ +++G
Sbjct: 245 GRIRKGPAPYNLEVPTYSFLEENKLLIG 272
>At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 210
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 151 ICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNL 194
+CTHLGCV N + F CPCHGS Y+ GR +GPAPL+L
Sbjct: 137 VCTHLGCVVPWNKAE--NKFLCPCHGSQYNAQGRVVRGPAPLSL 178
>At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 229
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 151 ICTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNL 194
+CTHLGCV N + F CPCHGS Y+ GR +GPAPL+L
Sbjct: 156 VCTHLGCVVPWNKAE--NKFLCPCHGSQYNAQGRVVRGPAPLSL 197
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 152 CTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEV 196
C H C P+ G CP HG Y G +K P+ L+V
Sbjct: 262 CAHRAC-PLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 152 CTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEV 196
C H C P+ G CP HG Y G +K P+ L+V
Sbjct: 262 CAHRAC-PLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 152 CTHLGCVPIANAGDYPGGFYCPCHGSHYDNVGRARKGPAPLNLEV 196
C H C P+ G CP HG Y G +K P+ L+V
Sbjct: 262 CAHRAC-PLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 167 PGGFYCPCHGSHYDNVGRARKGPAPLNLEVPP 198
P G Y P HG H G P P + PP
Sbjct: 621 PPGSYHPVHGQHMPPYGMQYPPPPPHVTQAPP 652
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 167 PGGFYCPCHGSHYDNVGRARKGPAPLNLEVPP 198
P G Y P HG H G P P + PP
Sbjct: 621 PPGSYHPVHGQHMPPYGMQYPPPPPHVTQAPP 652
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.142 0.467
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,395,723
Number of Sequences: 28952
Number of extensions: 224478
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 12,070,560
effective HSP length: 78
effective length of query: 132
effective length of database: 9,812,304
effective search space: 1295224128
effective search space used: 1295224128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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