Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000731-TA|BGIBMGA000731-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
         (775 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    28   0.33 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   5.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 647 QTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSG 690
           +TKL   M  N  ++    R  GQ +AY L A +I  G  + SG
Sbjct: 374 ETKLAE-MRDNYGISAGLNRTAGQQAAYQLLALVITLGIAIVSG 416


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 129 LVQQGESGPDGAGLRAALSVLYCWMHS 155
           L QQ ++ P GA      S LY WM S
Sbjct: 240 LSQQQQAAPQGAASANLPSPLYPWMRS 266


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 593 EYYCSKESLSGDN--KYQCRDCGGLRDAERSVLIETSPKYLI 632
           +Y   K S+   +  +   R C GL   + S+ +ETS   L+
Sbjct: 372 QYQIDKRSMGSHHGQRVMVRTCNGLELRDPSLFVETSASELV 413


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,706
Number of Sequences: 429
Number of extensions: 8286
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 775
length of database: 140,377
effective HSP length: 63
effective length of query: 712
effective length of database: 113,350
effective search space: 80705200
effective search space used: 80705200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)