Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000731-TA|BGIBMGA000731-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 95 1e-19
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 89 1e-17
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 89 1e-17
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 75 2e-13
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 74 4e-13
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 73 1e-12
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 71 2e-12
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 71 4e-12
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 70 7e-12
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 69 1e-11
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 69 1e-11
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 67 5e-11
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 67 5e-11
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 66 6e-11
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 64 3e-10
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 63 6e-10
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 62 1e-09
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 61 3e-09
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 52 1e-06
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 50 8e-06
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 50 8e-06
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 49 1e-05
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 49 1e-05
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 48 3e-05
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 47 4e-05
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 47 4e-05
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 47 4e-05
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 39 0.014
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 39 0.014
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 38 0.019
At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family pr... 35 0.18
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 33 0.95
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 32 1.3
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 32 1.7
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 32 1.7
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 30 5.1
At2g30040.1 68415.m03653 protein kinase family protein contains ... 30 5.1
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 30 6.7
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 30 6.7
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 95.5 bits (227), Expect = 1e-19
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 526 KRMRHLFDTTFLRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQ 585
K++R+ + F +S++ +FGG L ++V+C C + S D D+ L
Sbjct: 136 KKLRYNGNEPF-NGNSVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEI-----LQS 189
Query: 586 HSVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFK--FEPK 643
SV+ L+ + E L G+NKY+C C L A + + I +P L++ LK F F K
Sbjct: 190 SSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRFGGIFGGK 249
Query: 644 IQVQTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKDN-DQW 702
I + + + + ++ Y L+ I+H+G + +SGHYY KD+ +W
Sbjct: 250 IDKAISFGEILVLSNFM---SKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLGRW 306
Query: 703 HIYNDDIVTNADESEFSKLHPNSTPYILFYRRSDMEESSAPTL 745
+ ND V+ + E + YILF+ RS+ +SA TL
Sbjct: 307 YCCNDSFVSLSTLQEVL----SEKAYILFFSRSNQRPASAKTL 345
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 316 NSKQAPARKVGLLNLGNTCYMNSVMQALLVT 346
+ K+ +GL NLGNTCY+NSV+Q L T
Sbjct: 15 SQKRRNGPPLGLRNLGNTCYLNSVLQCLTFT 45
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 89.0 bits (211), Expect = 1e-17
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 5/186 (2%)
Query: 543 IDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKESLS 602
+ +F G+L C C + + + F DL L D + S S+ S L+ + S E+L
Sbjct: 172 VHNIFQGILTNETRCLRCETVTARDETFLDLSL---DIEQNS--SITSCLKNFSSTETLH 226
Query: 603 GDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSVTL 662
++K+ C C L++A++ + I+ P L++ LK FK+ ++ KL + + + L
Sbjct: 227 AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKL 286
Query: 663 PTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKDNDQWHIYNDDIVTNADESEFSKLH 722
YSL+A ++H G+ + GHY +L K ++ W ++D+ V +ES
Sbjct: 287 SNTVEPYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIEESAVQTFF 346
Query: 723 PNSTPY 728
+S Y
Sbjct: 347 GSSQEY 352
Score = 33.1 bits (72), Expect = 0.72
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 323 RKVGLLNLGNTCYMNSVMQAL 343
R G N GNTCY NSV+QAL
Sbjct: 21 RYFGFENFGNTCYCNSVLQAL 41
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 89.0 bits (211), Expect = 1e-17
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 5/186 (2%)
Query: 543 IDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKESLS 602
+ +F G+L C C + + + F DL L D + S S+ S L+ + S E+L
Sbjct: 167 VHKIFQGILTNETRCLRCETVTARDETFLDLSL---DIEQNS--SITSCLKNFSSTETLH 221
Query: 603 GDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSVTL 662
++K+ C C L++A++ + I+ P L++ LK FK+ ++ KL + + + L
Sbjct: 222 AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKL 281
Query: 663 PTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKDNDQWHIYNDDIVTNADESEFSKLH 722
YSL+A ++H G+ + GHY +L K ++ W ++D+ V +ES
Sbjct: 282 SNTVDEYVDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEIIEESAVQTFF 341
Query: 723 PNSTPY 728
+S Y
Sbjct: 342 GSSQEY 347
Score = 33.5 bits (73), Expect = 0.54
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 323 RKVGLLNLGNTCYMNSVMQALLVTRHFSTHVM 354
R G N GNTCY NSV+QAL F ++
Sbjct: 21 RYFGFENFGNTCYCNSVLQALYFCAPFREQLL 52
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 74.5 bits (175), Expect = 2e-13
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 587 SVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEP--KI 644
S+ S LE + ++E L D+ + C C R A + + + P L+ LK F + K
Sbjct: 749 SLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKN 808
Query: 645 QVQTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAK--DNDQW 702
++ T ++ H+ ++ GQ Y LYA H G L GHY AK D+++W
Sbjct: 809 KIDT-FVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGG-LGGGHYTAYAKLIDDNKW 866
Query: 703 HIYNDDIVTNADESEFSKLHPNSTPYILFYRRSDMEESSAPTLEELPPKLQECVMAHN 760
+ ++D V++ +ESE NS Y+LFYRR E+ T E C+ +HN
Sbjct: 867 YHFDDSHVSSVNESEIR----NSAAYVLFYRRV-RSETETQTAEMSTDMDYSCLNSHN 919
Score = 39.5 bits (88), Expect = 0.008
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMM-------KMNAVPYWSKMGILFA----KMM 374
GL NLGNTC+MNS +Q L T + + + N + ++ I F K+
Sbjct: 305 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 364
Query: 375 HSYNTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
S + P F + P F+ NQHDS E L +L
Sbjct: 365 SSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFL 402
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 73.7 bits (173), Expect = 4e-13
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)
Query: 537 LRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYC 596
++ +I+ +F G + C+ C S + D + S+ + L Y
Sbjct: 205 VKAKTIVQDLFSGSVSHVTTCSKCGRDSEASSKMEDFYAL--ELNVKGLKSLDASLNDYL 262
Query: 597 SKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYH 656
S E L+GDN+Y C C DA R + + T P + LK F PK + K+ S
Sbjct: 263 SLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKRCIFLPKTTAKKKITSSFSF 322
Query: 657 NQSVTLPTVRARGQHS--AYSLYAAIIHAGTTLDSGHYYTLAKDNDQ--WHIYNDDIVTN 712
Q + + + A + Y L A +IH G+ ++SGHY KD W ++D+ V+
Sbjct: 323 PQVLDMGSRLAESSQNKLTYDLSAVLIHKGSAVNSGHYVAHIKDEKTGLWWEFDDEHVSE 382
Query: 713 ADESEFSKLHPNSTP 727
+ ++ +STP
Sbjct: 383 LGKRPCNEA-SSSTP 396
Score = 42.7 bits (96), Expect = 9e-04
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 316 NSKQAPARKVGLLNLGNTCYMNSVMQALLVTRHFSTHV------MMKMNAVPYWSKMGIL 369
+S+ PA GL NLG TCY NS++Q L + F V ++K N P ++ L
Sbjct: 100 DSESTPA---GLTNLGATCYANSILQCLYMNTAFREGVFSVEVHVLKQN--PVLDQIARL 154
Query: 370 FAKMMHSYNTKLNPDEFFNVVKPPFFTVNNQHDSSEFLGYLFVLLQ 415
FA++ S + ++ D F VK Q D+ EFL L LL+
Sbjct: 155 FAQLHASQKSFVDSDAF---VKTLELDNGVQQDTHEFLTLLLSLLE 197
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 72.5 bits (170), Expect = 1e-12
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 537 LRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYC 596
L+ +++ MFGG L ++V+C C S + DL L E S+Q L +
Sbjct: 553 LQETTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVE----SLQDALTQFT 608
Query: 597 SKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYH 656
E L G+N Y+C C G A + + I +P L +VLK F+ E + K +
Sbjct: 609 RPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQ-EGRYGKINKCISFPEM 667
Query: 657 NQSVTLPTVRARGQHSAYSLYAAIIHAGT--TLDSGHYYTLAKD-NDQWHIYNDDIVTNA 713
+ T R Y LYA I+H T SGHY + KD W+ +D +
Sbjct: 668 LDMIPFMT-RTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPV 726
Query: 714 DESEFSKLHPNSTPYILFYRRS 735
++ + Y+LFY RS
Sbjct: 727 PMTQVM----SEGAYMLFYMRS 744
Score = 34.3 bits (75), Expect = 0.31
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNA 359
GL+N GN+CY N+V+Q+L T+ +++ + ++
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHS 472
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 71.3 bits (167), Expect = 2e-12
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 536 FLRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYY 595
F +++ FGG L ++++C C S ++ DL + + S++ L +
Sbjct: 440 FAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEI----DGDIGSLEEALAQF 495
Query: 596 CSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMY 655
+ E L G+N+Y C C + A++ ++I P L +VLK F+ + +K +H
Sbjct: 496 TAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSD-NFGKLSKPIHFPE 554
Query: 656 HNQSVTLPTVRARGQHSAYSLYAAIIH--AGTTLDSGHYYTLAKDND-QWHIYNDDIV 710
+ G H YSLYA ++H A +TL SGHY K D W +D V
Sbjct: 555 LLDISPYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNV 612
Score = 36.7 bits (81), Expect = 0.058
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNA 359
GL+NLGN+CY N+V+Q L TR ++++ +++
Sbjct: 330 GLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHS 363
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 70.5 bits (165), Expect = 4e-12
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 539 RDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSK 598
R S++ +FGG L ++V+C C S D F DL L D +A S+Q L + +
Sbjct: 223 RRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSL---DISKAD--SLQRALSRFTAV 277
Query: 599 ESL-SGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHN 657
E L +G YQC C A++ + + +P L + LK F+ ++ K+ + +
Sbjct: 278 ELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDFTSAID 337
Query: 658 QSVTLPTVRARGQ-HSAYSLYAAIIHAGTTLDSGHYYTLAK-DNDQWHIYNDDIVTNADE 715
P V + + Y+LY ++H G + SGHY + + W+ +D+ V E
Sbjct: 338 MK---PFVSGPHEGNLKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSE 394
Query: 716 SEFSKLHPNSTPYILFY---RRSDMEESSAPTLEE 747
K N Y+LFY R++ + ++S P +++
Sbjct: 395 ----KTVFNQKAYMLFYVRDRQNAVPKNSVPVVKK 425
Score = 35.1 bits (77), Expect = 0.18
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 326 GLLNLGNTCYMNSVMQALLVT 346
GL NLGNTC++NSV+Q L T
Sbjct: 108 GLQNLGNTCFLNSVLQCLTYT 128
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 69.7 bits (163), Expect = 7e-12
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 14/201 (6%)
Query: 537 LRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYC 596
L ++I FGG L ++++C C S R+ DL + + ++ L +
Sbjct: 657 LEDTTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEI----DGDISTLDDALRRFT 712
Query: 597 SKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYH 656
E L G+NKY+C C A++ + I P L + LK F+ K KL+ +
Sbjct: 713 RTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQ-AGKFGKLNKLIR--FP 769
Query: 657 NQSVTLPTVRARGQHS-AYSLYAAIIHAG--TTLDSGHYYTLAKDNDQWHIYNDDIVTNA 713
P V + S Y LY I+H SGHY ++ ++W+ +D V +
Sbjct: 770 ETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRNQNKWYKADDSTVVTS 829
Query: 714 DESEFSKLHPNSTPYILFYRR 734
D Y+LFY R
Sbjct: 830 DVERIL----TKGAYMLFYAR 846
Score = 33.9 bits (74), Expect = 0.41
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNA 359
GL+N+GN+C+ N V Q L+ T +T+ + + ++
Sbjct: 543 GLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHS 576
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 68.9 bits (161), Expect = 1e-11
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 587 SVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEP--KI 644
S+ S LE + ++E L D+ + C C R A + + + P L+ LK F + K
Sbjct: 748 SLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKN 807
Query: 645 QVQTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAK--DNDQW 702
++ T ++ H+ ++ Q Y LYA H G L GHY AK D+++W
Sbjct: 808 KIDT-FVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGG-LGGGHYTAYAKLIDDNEW 865
Query: 703 HIYNDDIVTNADESEFSKLHPNSTPYILFYRRSDMEESSAPTLE 746
+ ++D V++ +ESE NS Y+LFYRR E+ T+E
Sbjct: 866 YHFDDSHVSSVNESEIK----NSAAYVLFYRRV-RSETETQTVE 904
Score = 39.9 bits (89), Expect = 0.006
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMM-------KMNAVPYWSKMGILFA----KMM 374
GL NLGNTC+MNS +Q L T + + + N + ++ I F K+
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 375 HSYNTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
S + P F + P F+ NQHDS E L +L
Sbjct: 364 SSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFL 401
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 68.9 bits (161), Expect = 1e-11
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 587 SVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEP--KI 644
S+ S LE + ++E L D+ + C C R A + + + P L+ LK F + K
Sbjct: 748 SLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKN 807
Query: 645 QVQTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAK--DNDQW 702
++ T ++ H+ ++ Q Y LYA H G L GHY AK D+++W
Sbjct: 808 KIDT-FVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGG-LGGGHYTAYAKLIDDNEW 865
Query: 703 HIYNDDIVTNADESEFSKLHPNSTPYILFYRRSDMEESSAPTLE 746
+ ++D V++ +ESE NS Y+LFYRR E+ T+E
Sbjct: 866 YHFDDSHVSSVNESEIK----NSAAYVLFYRRV-RSETETQTVE 904
Score = 39.9 bits (89), Expect = 0.006
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMM-------KMNAVPYWSKMGILFA----KMM 374
GL NLGNTC+MNS +Q L T + + + N + ++ I F K+
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 375 HSYNTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
S + P F + P F+ NQHDS E L +L
Sbjct: 364 SSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAFL 401
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 66.9 bits (156), Expect = 5e-11
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 540 DSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKE 599
+ I +F G + +EC + S ++ F DLQL + V + + Y E
Sbjct: 302 EGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKD-----VYASFDKYVEVE 356
Query: 600 SLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFE------PKI--QVQTKLM 651
L GDNKY GL+DA++ VL P L L LK F+++ KI + + L
Sbjct: 357 RLEGDNKYHAEG-HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLE 415
Query: 652 HSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKD--NDQWHIYNDDI 709
+ L R + Y+L++ ++H+G + GHYY + +DQW+ ++D+
Sbjct: 416 LDLDREDGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDER 474
Query: 710 VTNAD 714
VT D
Sbjct: 475 VTKED 479
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 325 VGLLNLGNTCYMNSVMQALLVTRHF 349
VGL N G TCYMNS++Q L +F
Sbjct: 198 VGLKNQGATCYMNSLLQTLYHIPYF 222
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 66.9 bits (156), Expect = 5e-11
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 540 DSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKE 599
+ I +F G + +EC + S ++ F DLQL + V + + Y E
Sbjct: 303 EGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKD-----VYASFDKYVEVE 357
Query: 600 SLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFE------PKI--QVQTKLM 651
L GDNKY GL+DA++ VL P L L LK F+++ KI + + L
Sbjct: 358 RLEGDNKYHAEG-HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLE 416
Query: 652 HSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKD--NDQWHIYNDDI 709
+ L R + Y+L++ ++H+G + GHYY + +DQW+ ++D+
Sbjct: 417 LDLDREDGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDER 475
Query: 710 VTNAD 714
VT D
Sbjct: 476 VTKED 480
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 325 VGLLNLGNTCYMNSVMQALLVTRHF 349
VGL N G TCYMNS++Q L +F
Sbjct: 199 VGLKNQGATCYMNSLLQTLYHIPYF 223
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 66.5 bits (155), Expect = 6e-11
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 587 SVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEP--KI 644
S+ S LE + ++E L D+ + C C R A + + + P L+ LK F + K
Sbjct: 734 SLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFKN 793
Query: 645 QVQTKLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAK--DNDQW 702
++ T L++ H+ ++ GQ Y LYA H G L GHY AK D +W
Sbjct: 794 KIDT-LVNFHIHDLDLSKYVKNEDGQSYLYELYAISNHYGG-LGGGHYTAYAKLMDETKW 851
Query: 703 HIYNDDIVTNADESEFSKLHPNSTPYILFYRR--SDMEES 740
+ ++D V+ +ESE S Y+LFY+R SD E S
Sbjct: 852 YNFDDSRVSAVNESEIK----TSAAYVLFYQRVKSDSETS 887
Score = 41.1 bits (92), Expect = 0.003
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 326 GLLNLGNTCYMNSVMQALL----VTRHFSTHVMMKMNAV-PYWSK------MGILFAKMM 374
GL NLGNTC+MNS +Q L + +F +NA P + G L K+
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLW 361
Query: 375 HSYNTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
S + P F + P F+ NQHDS E L +L
Sbjct: 362 SSGQNTVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFL 399
Score = 30.7 bits (66), Expect = 3.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 538 RRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFP 578
R DS+I +F G + + C DC S++ D F L L P
Sbjct: 440 RNDSVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLP 480
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 64.5 bits (150), Expect = 3e-10
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 15/215 (6%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKES 600
++I +FGG+L ++V+CT C + S + DL + S++ L+ + +KE
Sbjct: 293 TLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEI----HGDAVSLEECLDQFTAKEW 348
Query: 601 LSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSV 660
L GDN Y+C C A + + I +P L + LK F+ ++ ++ +
Sbjct: 349 LQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLG- 407
Query: 661 TLPTVRARGQHS-AYSLYAAIIHAGTTLDS--GHYYTLAKD-NDQWHIYNDDIVTNADES 716
P + G+ S Y LYA I+H S GHY KD W+ +D V +
Sbjct: 408 --PYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELE 465
Query: 717 EFSKLHPNSTPYILFYRRSDMEESSAPTLEELPPK 751
+ + Y+L Y R S+ + E K
Sbjct: 466 DVL----SQRAYMLLYSRVQPRPSNLRSEESQDEK 496
Score = 29.5 bits (63), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVM 354
GL N GN+C+ N V+Q L TR +++
Sbjct: 175 GLTNCGNSCFANVVLQCLSWTRPLVAYLL 203
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 63.3 bits (147), Expect = 6e-10
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 540 DSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKE 599
+ I +F G + +EC + S ++ F DLQL + V + + Y E
Sbjct: 302 EGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKD-----VYASFDKYVEVE 356
Query: 600 SLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFE------PKI--QVQTKLM 651
L GDNKY + L+DA++ VL P L L LK F+++ KI + + L
Sbjct: 357 RLEGDNKYHA-EGHDLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ 415
Query: 652 HSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKD--NDQWHIYNDDI 709
+ L + + Y+L++ ++H+G + GHYY + +DQW+ ++D+
Sbjct: 416 LDLDREDGRYLSPDADKSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDER 474
Query: 710 VTNAD 714
VT D
Sbjct: 475 VTKED 479
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 325 VGLLNLGNTCYMNSVMQALLVTRHF 349
VGL N G TCYMNS++Q L +F
Sbjct: 198 VGLKNQGATCYMNSLLQTLYHIPYF 222
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 62.1 bits (144), Expect = 1e-09
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 17/207 (8%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKES 600
++I +FGG+L ++V+CT C+ S + DL + S++ L+ + ++E
Sbjct: 287 TLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDLIVEM----HGDAGSLEECLDQFTAEEW 342
Query: 601 LSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSV 660
L GDN Y+C C A + + I +P L + LK ++ KL + +++
Sbjct: 343 LHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGGR----YGKLNKRISFPETL 398
Query: 661 TL-PTVRARGQHS-AYSLYAAIIHAGTTLDS--GHYYTLAKD-NDQWHIYNDDIVTNADE 715
L P + G S Y LYA I+H S GHY KD W+ +D + + +
Sbjct: 399 DLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVEL 458
Query: 716 SEFSKLHPNSTPYILFYRRSDMEESSA 742
+ + Y+L Y R SS+
Sbjct: 459 EDVL----SQRAYMLLYSRIQARSSSS 481
Score = 31.5 bits (68), Expect = 2.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMK 356
GL+N GN+C+ N ++Q L TR +++ K
Sbjct: 169 GLMNCGNSCFANVILQCLSWTRPLVAYLLEK 199
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 60.9 bits (141), Expect = 3e-09
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 19/230 (8%)
Query: 533 DTTFLRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLL 592
D T R D +F G L++ + C +C S + + L L D ++ S L
Sbjct: 282 DRTSFRGDITSQDVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDVD-----TLGSAL 336
Query: 593 EYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFK----FEPKIQVQT 648
E + E L D + C +C E+ +L++ P LK FK + KI
Sbjct: 337 ESFTRVEKL--DEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHV 394
Query: 649 KLMHSMYHNQSVTLPTVRARGQHSAYSLYAAIIHAGTTLDSGHYYTLAKDNDQ-WHIYND 707
K+ + + + ++ + Y LYA + H G ++ GHY + + + WH ++D
Sbjct: 395 KIPLEI--DLQPYMRNIQENEVSTKYHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHFDD 452
Query: 708 DIVTNADESEFSKLHPNSTPYILFYRRSDMEESSAPTLEELPPKLQECVM 757
VT DE + + YILFY R S+ EE+ P ++ ++
Sbjct: 453 SKVTRIDED----MVLSQDSYILFYAREGTRWFSS-VYEEMQPLVEASLL 497
Score = 30.7 bits (66), Expect = 3.8
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNAVP--YWSKMGILFAKMMHSYNTKLNP 383
GL NLGN+C++NSV Q T ++ VP ++ + + + L P
Sbjct: 177 GLWNLGNSCFLNSVFQCFTHTVPLIESLLSFRYEVPCHCGNEFFCVIRAIRYHIEAALRP 236
Query: 384 DEFFNVVKPPFFTVNNQHDSSEFLGY 409
+ + P FF N + S +F Y
Sbjct: 237 ERC--PIAPYFFFDNLNYFSPDFQRY 260
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 52.0 bits (119), Expect = 1e-06
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNAV--PYWSKMGILFAKMMHS---YNTK 380
GL+NLGNTC+ NSVMQ LL H + + +V P S + LFA+ + +
Sbjct: 203 GLVNLGNTCFFNSVMQNLLSLDQLREHFLKEDLSVSGPLVSSLKELFAESNSEASVFRNE 262
Query: 381 LNP-DEFFNVV-KPPFFTVNNQHDSSEFL 407
+NP D FF+V + P F QHDS E L
Sbjct: 263 INPRDLFFSVCSQAPQFRGYQQHDSHELL 291
Score = 35.5 bits (78), Expect = 0.13
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 533 DTTFLRRDSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFP 578
D++ ++ ++ID++FGG + + V C +C S + F DL L P
Sbjct: 316 DSSTYQKPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPVP 361
Score = 31.5 bits (68), Expect = 2.2
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 14/132 (10%)
Query: 616 RDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMH---SMYHNQSVTLPTVRARGQHS 672
RDA + VLI +P L + LK F + + +V H + + S + T +
Sbjct: 952 RDARKKVLINKAPPVLTIHLKRFSQDARGRVSKLSGHVDFQEFIDLSKYMDTRCSEEDEP 1011
Query: 673 AYSLYAAIIHAGTTLDSGHYYTLAKDNDQWHIYNDDIVTNAD---ESEFSKLHP------ 723
Y L + H G + GHY + + + +D N+ + S++ P
Sbjct: 1012 VYRLAGLVEHLG-AMSRGHYVSYIRGGHKERRDSDTKEPNSSIWYHASDSQVRPASLEEV 1070
Query: 724 -NSTPYILFYRR 734
S YILFY R
Sbjct: 1071 LRSEAYILFYER 1082
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 49.6 bits (113), Expect = 8e-06
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 17/212 (8%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKES 600
+I+D +FGG L++ + C +C+S S + + L D +++ LE + E
Sbjct: 283 NIVDNVFGGGLMSTLCCCNCNSVSNTFEPSLGWSLEIED-----VNTLWKALESFTCVEK 337
Query: 601 LSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSV 660
L +++ C +C E+ + + P LK F + ++ H + +
Sbjct: 338 L--EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFT-NDGVTMEKIFDHIEFPLELD 394
Query: 661 TLPTVRARGQ---HSAYSLYAAIIHAGTTLDSGHYYTLAKD-NDQWHIYNDDIVTNADES 716
P + + + Y LYA + H G GHY + + + WH ++D VT E
Sbjct: 395 LSPFMSSNHDPEVSTRYHLYAFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEE 454
Query: 717 EFSKLHPNSTPYILFYRRSDMEESSAPTLEEL 748
+ YILFY R S+ T E+L
Sbjct: 455 RVL----SRPAYILFYAREGTPWFSS-TFEQL 481
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 49.6 bits (113), Expect = 8e-06
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNA---VPYWSKMGILFAKMMHSYNTK-- 380
GL+NLGNTC+ NS+MQ LL H + + + P S + LF + K
Sbjct: 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTETKPEAGLKSV 291
Query: 381 LNPDEFFN--VVKPPFFTVNNQHDSSEFLGYLFVLLQSYE 418
+NP FF K P F +QHDS E L L L + E
Sbjct: 292 INPRAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEE 331
Score = 31.9 bits (69), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDK 580
++I+++FGG + V C +C SS + F DL L P K
Sbjct: 349 TLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPVPFK 388
Score = 31.9 bits (69), Expect = 1.7
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 616 RDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQSVTLPTV---RARGQH- 671
RDA + VLI +P L + LK F + + ++ +KL + + + L R G+
Sbjct: 830 RDATKKVLINKAPPVLTIHLKRFSQDLRGRL-SKLNGHVAFKEVIDLRQYMDSRCSGEDP 888
Query: 672 SAYSLYAAIIHAGTTLDSGHYYTL------AKDNDQ----WHIYNDDIVTNADESEFSKL 721
Y L + H+G T+ GHY K+ D W+ +D V + L
Sbjct: 889 PVYRLAGLVEHSG-TMRGGHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKV--L 945
Query: 722 HPNSTPYILFYRRSDMEE 739
H S YILFY R +E
Sbjct: 946 H--SEAYILFYERIFSQE 961
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 48.8 bits (111), Expect = 1e-05
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKES 600
S + +FGG L + V+ +S+ + L L P+ Q ++ L + ++E
Sbjct: 364 SELSEIFGGQLKSVVKAKGTKASATVQPY---LLLHLDIHPDGVQ-GIEDALHLFSAQED 419
Query: 601 LSGDNKYQCRDCG--GLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQ 658
L G Y+ G G+ A +S+ I+ K +IL L F + Q TKL +
Sbjct: 420 LEG---YRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGS--QGSTKLRKGVKFPL 474
Query: 659 SVTLPT---VRARGQHSAYSLYAAIIHAGTTLDSGHYYTLA-KDNDQWHIYNDDIVTNAD 714
+ L V + Y L A I H G GHY T A + N QW ++D VT
Sbjct: 475 ELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIG 534
Query: 715 ESEFSKLHPNSTPYILFYRR 734
+KL + Y+LFY++
Sbjct: 535 ----TKLVLHDQAYVLFYKQ 550
Score = 31.5 bits (68), Expect = 2.2
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 326 GLLNLGNTCYMNSVMQALL 344
GL+N GN C++N+ +QALL
Sbjct: 198 GLINAGNLCFLNATLQALL 216
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 48.8 bits (111), Expect = 1e-05
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 541 SIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKES 600
S + +FGG L + V+ +S+ + L L P+ Q ++ L + ++E
Sbjct: 364 SELSEIFGGQLKSVVKAKGTKASATVQPY---LLLHLDIHPDGVQ-GIEDALHLFSAQED 419
Query: 601 LSGDNKYQCRDCG--GLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLMHSMYHNQ 658
L G Y+ G G+ A +S+ I+ K +IL L F + Q TKL +
Sbjct: 420 LEG---YRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGS--QGSTKLRKGVKFPL 474
Query: 659 SVTLPT---VRARGQHSAYSLYAAIIHAGTTLDSGHYYTLA-KDNDQWHIYNDDIVTNAD 714
+ L V + Y L A I H G GHY T A + N QW ++D VT
Sbjct: 475 ELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIG 534
Query: 715 ESEFSKLHPNSTPYILFYRR 734
+KL + Y+LFY++
Sbjct: 535 ----TKLVLHDQAYVLFYKQ 550
Score = 31.5 bits (68), Expect = 2.2
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 326 GLLNLGNTCYMNSVMQALL 344
GL+N GN C++N+ +QALL
Sbjct: 198 GLINAGNLCFLNATLQALL 216
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 47.6 bits (108), Expect = 3e-05
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 317 SKQAPARKVGLLNLGNTCYMNSVMQALLVTRHFSTHVMMKMNAVPYWSK----------- 365
++ + A GLLNLGNTC+MNS +Q L+ T F+++ + W
Sbjct: 309 TRGSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALA 368
Query: 366 MGILFAKMMHSYNTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
G L K+ T + P F + P F+ NQHDS E L +L
Sbjct: 369 FGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFL 415
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 47.2 bits (107), Expect = 4e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 580 KPEASQHSVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFK 639
+P+ S S+ LE + ++E L D+ + C C R A + + + P+ L++ LK F
Sbjct: 468 RPQESV-SLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFS 526
Query: 640 FEPKIQVQTKLMHSM-YHNQSVTLPTVRARGQHS-AYSLYAAIIHAGTTLDSGHYYTLAK 697
+ ++ + + N ++ GQ + Y LYA H G+ + GHY
Sbjct: 527 YSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGS-MGGGHYTAYVH 585
Query: 698 DN-DQWHIYNDDIVTNADESEFSKLHPNSTPYILFYRR 734
D+W+ ++D V + + S Y+LFY+R
Sbjct: 586 HGGDRWYDFDDSHVHQISQEKIK----TSAAYVLFYKR 619
Score = 34.7 bits (76), Expect = 0.24
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 326 GLLNLGNTCYMNSVMQALLVT--------RHFSTHVMMKMNAVPYWSKMGILFAKMMHSY 377
GL NLGNTC+MNS +Q L T +S + + N + ++ + F ++ S
Sbjct: 31 GLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLD-NPLGMKGEIALAFGDLLRSL 89
Query: 378 ----NTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
+ + P F + P F+ NQHDS E L +L
Sbjct: 90 WAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFL 128
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 47.2 bits (107), Expect = 4e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 580 KPEASQHSVQSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFK 639
+P+ S S+ LE + ++E L D+ + C C R A + + + P+ L++ LK F
Sbjct: 468 RPQESV-SLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFS 526
Query: 640 FEPKIQVQTKLMHSM-YHNQSVTLPTVRARGQHS-AYSLYAAIIHAGTTLDSGHYYTLAK 697
+ ++ + + N ++ GQ + Y LYA H G+ + GHY
Sbjct: 527 YSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGS-MGGGHYTAYVH 585
Query: 698 DN-DQWHIYNDDIVTNADESEFSKLHPNSTPYILFYRR 734
D+W+ ++D V + + S Y+LFY+R
Sbjct: 586 HGGDRWYDFDDSHVHQISQEKIK----TSAAYVLFYKR 619
Score = 34.7 bits (76), Expect = 0.24
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 326 GLLNLGNTCYMNSVMQALLVT--------RHFSTHVMMKMNAVPYWSKMGILFAKMMHSY 377
GL NLGNTC+MNS +Q L T +S + + N + ++ + F ++ S
Sbjct: 31 GLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLD-NPLGMKGEIALAFGDLLRSL 89
Query: 378 ----NTKLNPDEFFNVVK--PPFFTVNNQHDSSEFLGYL 410
+ + P F + P F+ NQHDS E L +L
Sbjct: 90 WAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFL 128
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 47.2 bits (107), Expect = 4e-05
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 45/213 (21%)
Query: 547 FGGVLLTRVECTDCHSSSLSRDVFRDLQLAF-------PDKPEASQHS-----------V 588
F G+L + V CT C S+S + D F D+ L P +++S +
Sbjct: 304 FSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRKNRYSGGPSVNAIMPTL 363
Query: 589 QSLLEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNF---------- 638
L+++ E L D K C+ CG R++ + + I P L L +K F
Sbjct: 364 SGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHSLTRKTSR 423
Query: 639 KFEPKIQVQTKLMHSMYHNQSV-------TLPTVRARGQHSA---------YSLYAAIIH 682
K + +Q +L S Y + S+ + G++ + + ++A + H
Sbjct: 424 KIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFDGEGEYDSSSSSSPSAEFEIFAVVTH 483
Query: 683 AGTTLDSGHYYTLAKDNDQWHIYNDDIVTNADE 715
G L+SGHY T + W+ +D + +E
Sbjct: 484 KG-MLESGHYVTYLRLKGLWYRCDDAWINEVEE 515
Score = 33.5 bits (73), Expect = 0.54
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 326 GLLNLGNTCYMNSVMQALL 344
GL NLG+TC+MN+V+QAL+
Sbjct: 178 GLNNLGSTCFMNAVLQALV 196
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 38.7 bits (86), Expect = 0.014
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 315 PNSKQAP--ARKVGLLNLGNTCYMNSVMQALL 344
P +QA GL+NLGNTCYMNS MQ L+
Sbjct: 147 PEEQQAANLGYSAGLVNLGNTCYMNSTMQCLI 178
Score = 31.5 bits (68), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 674 YSLYAAIIHAGTTLDSGHYYTLAK-DNDQWHIYND 707
Y L + + H G + DSGHY K ++ +W Y+D
Sbjct: 463 YDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDD 497
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 38.7 bits (86), Expect = 0.014
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 674 YSLYAAIIHAGTTLDSGHYYTLAKDNDQWHIYNDDIVTNADESEFSKLHPNSTPYILFYR 733
Y L+ + H GT++ GHY +W I+NDD V + + P Y+ F++
Sbjct: 741 YKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKVGISTDP------PKDMGYVYFFQ 794
Query: 734 RSD 736
R D
Sbjct: 795 RLD 797
Score = 31.9 bits (69), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHF 349
GL+NLGN+CY+ + MQ + T F
Sbjct: 309 GLVNLGNSCYLAATMQIVFSTHSF 332
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 38.3 bits (85), Expect = 0.019
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 674 YSLYAAIIHAGTTLDSGHYYTLAK-DNDQWHIYNDDIVTNADESEFSKL 721
Y L A + H G + DSGHY K ++ +W Y+DD + E + +KL
Sbjct: 413 YDLVAVLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREEDITKL 461
Score = 35.9 bits (79), Expect = 0.10
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 326 GLLNLGNTCYMNSVMQAL 343
GL+NLGNTCYMNS +Q L
Sbjct: 105 GLVNLGNTCYMNSTVQCL 122
>At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 268
Score = 35.1 bits (77), Expect = 0.18
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 540 DSIIDTMFGGVLLTRVECTDCHSSSLSRDVFRDLQLAFPDKPEASQHSVQSLLEYYCSKE 599
DS+ID G + L + ++SS+ + F D+ AF D S L C
Sbjct: 75 DSVIDMRLGELALKNSNSLNSNASSMKEEAFLDISQAFSDFSACSSDISGELQRLACLPS 134
Query: 600 SLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFE 641
+ N + GG +AE +E P L +NF E
Sbjct: 135 PEADRN-----ESGGDNEAEHDPELEREPCLGFLQRENFSTE 171
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 32.7 bits (71), Expect = 0.95
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 209 DVVIHILASLREQQEALDKIATNVRKVLGNLAADSRQSSRQHLQNVVDIVNAMVD--YKM 266
DVV+ +LA ++ + I + V+K++G D+ + +++H++N + ++ +VD +
Sbjct: 596 DVVLRMLARNSMSEKLAEDIDSCVKKIIG----DAYEVAKKHVRNNREAIDKLVDVLLEK 651
Query: 267 EPLKGEPLETFKDKYED 283
E L G+ +Y D
Sbjct: 652 ETLTGDEFRAILSEYTD 668
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 32.3 bits (70), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 644 IQVQTKLMHSMYHNQSVTLPTVRARG-QHSAYSLYAAIIHAGTTLDSGHYYTLAKDNDQW 702
+QV + S YH+ VT T + + HS L +++ + GH Y+LA D
Sbjct: 57 VQVDPSAVDSPYHSVKVTTDTTKEKSTNHSPNILLGSLVR-----EEGHIYSLATSGDLL 111
Query: 703 HIYND--DIVTNADESEFSKLHPNS 725
+ +D +I + EFS NS
Sbjct: 112 YTGSDSKNIRVWKNHVEFSSFKSNS 136
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 31.9 bits (69), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHF 349
GL NLGN C++N ++QAL + F
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDF 98
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 31.9 bits (69), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 326 GLLNLGNTCYMNSVMQALLVTRHF 349
GL NLGN C++N ++QAL + F
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDF 98
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 30.3 bits (65), Expect = 5.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 215 LASLREQQEALDKIATNVRKVLGNLAADSR 244
LA+ R ++E LDKI +++KVL + SR
Sbjct: 151 LANFRNEKELLDKIIDSIKKVLARITRASR 180
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 30.3 bits (65), Expect = 5.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 592 LEYYCSKESLSGDNKYQCRDCGGLRDAERSVLIETSPKYLILVLKNFKFEPKIQVQTKLM 651
LE Y S ES S D+ Q R+ + +V E +ILV++N + + +M
Sbjct: 356 LESYISLESSSDDSVRQPRNEESATELASAVTCEAILLVMILVVENIQIYATFYTSSIIM 415
Query: 652 HSMY 655
H +Y
Sbjct: 416 HILY 419
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 29.9 bits (64), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 594 YYCSKESLSGDNKYQCRDCGG 614
+YC + + D K++CR CGG
Sbjct: 277 HYCPELGTNADRKFRCRGCGG 297
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 29.9 bits (64), Expect = 6.7
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 670 QHSAYSLYAAIIHAGTTLDSGHYYTLAKDNDQWHIYNDDIVTNADESEFSKLHPNSTPYI 729
Q+S L+A ++H LD G + K+ D++ + N +++ +ESE + LH P+I
Sbjct: 791 QNSVEELWA-LLHF---LDPGKF----KNKDEF-VENYKNLSSFNESELANLHLELRPHI 841
Query: 730 LFYRRSDMEESSAPTLEEL 748
L D+E+S P +E +
Sbjct: 842 LRRVIKDVEKSLPPKIERI 860
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,230
Number of Sequences: 28952
Number of extensions: 682714
Number of successful extensions: 1788
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 85
length of query: 775
length of database: 12,070,560
effective HSP length: 87
effective length of query: 688
effective length of database: 9,551,736
effective search space: 6571594368
effective search space used: 6571594368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -