Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000730-TA|BGIBMGA000730-PA|undefined
         (40 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   1.2  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   3.8  

>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 9  VSQGQTTEVTKLPPNPRRKGPNPLESILKADD 40
          VS+   TE  K P N    GPNP + + + ++
Sbjct: 3  VSEANGTETIKPPMNGNPYGPNPSDFLSRVNN 34


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 154

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 2  ACLEVTQVSQGQTTEVTK 19
          A L VTQ+ Q  TTEV K
Sbjct: 31 AALSVTQLYQASTTEVLK 48


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 19   KLPPNPRRKGPNPLESILKA 38
            KLPP    +  +PLE IL+A
Sbjct: 1952 KLPPASNNRKVDPLEDILQA 1971


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,985
Number of Sequences: 5004
Number of extensions: 3677
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 40
length of database: 2,362,478
effective HSP length: 21
effective length of query: 19
effective length of database: 2,257,394
effective search space: 42890486
effective search space used: 42890486
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)