Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000730-TA|BGIBMGA000730-PA|undefined
         (40 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45001| Best HMM Match : TrkA_N (HMM E-Value=1.8)                    26   4.9  
SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)                 25   6.5  

>SB_45001| Best HMM Match : TrkA_N (HMM E-Value=1.8)
          Length = 286

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 8   QVSQGQTTEVTKLPPNPRRKGPNPLES 34
           QV+ G+ TEVT   PN   K P+ + S
Sbjct: 220 QVAMGEVTEVTDEHPNNDAKEPDDITS 246


>SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)
          Length = 336

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 20  LPPNPRRKGPNPLESILKA 38
           +PP   RK PNPL+ +L++
Sbjct: 298 IPPKSSRKTPNPLKYMLRS 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,409
Number of Sequences: 59808
Number of extensions: 35075
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 2
length of query: 40
length of database: 16,821,457
effective HSP length: 21
effective length of query: 19
effective length of database: 15,565,489
effective search space: 295744291
effective search space used: 295744291
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)