GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000730-TA|BGIBMGA000730-PA|undefined
         (40 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0642 - 23883300-23884298                                         25   5.8  
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    25   7.7  

>01_05_0642 - 23883300-23884298
          Length = 332

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 16  EVTKLPPNPRRKGPNPLESI 35
           ++  LPP+P   GP+PL S+
Sbjct: 151 DLAALPPSPAYGGPDPLASL 170


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 2   ACLEVTQVSQGQTTEVTKLPPNPRRKGPNP 31
           +C   T  S+ +  E++KLPP P    P P
Sbjct: 286 SCSSDTAASRSRLPELSKLPPIPPPPPPPP 315


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,990
Number of Sequences: 37544
Number of extensions: 30975
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 2
length of query: 40
length of database: 14,793,348
effective HSP length: 21
effective length of query: 19
effective length of database: 14,004,924
effective search space: 266093556
effective search space used: 266093556
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)