GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000730-TA|BGIBMGA000730-PA|undefined
         (40 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-12|AAR12986.1|  485|Caenorhabditis elegans Hypothetical p...    25   5.0  
U29380-11|AAR12987.1|  501|Caenorhabditis elegans Hypothetical p...    25   5.0  

>U29380-12|AAR12986.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK546.2a protein.
          Length = 485

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 1   MACLEVTQVSQGQTTEVTKL 20
           +ACLEV  VSQ + TE+  L
Sbjct: 86  LACLEVLNVSQNKLTELPDL 105


>U29380-11|AAR12987.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK546.2c protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 1   MACLEVTQVSQGQTTEVTKL 20
           +ACLEV  VSQ + TE+  L
Sbjct: 86  LACLEVLNVSQNKLTELPDL 105


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,880
Number of Sequences: 27539
Number of extensions: 23885
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 2
length of query: 40
length of database: 12,573,161
effective HSP length: 21
effective length of query: 19
effective length of database: 11,994,842
effective search space: 227901998
effective search space used: 227901998
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)