GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000730-TA|BGIBMGA000730-PA|undefined
         (40 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    27   1.2  
At1g23330.1 68414.m02917 expressed protein                             26   2.7  
At5g59790.1 68418.m07495 expressed protein                             26   3.6  
At2g32850.2 68415.m04025 protein kinase family protein contains ...    26   3.6  
At2g32850.1 68415.m04024 protein kinase family protein contains ...    26   3.6  
At3g45440.1 68416.m04905 lectin protein kinase family protein co...    25   6.3  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    25   8.4  

>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 5   EVTQVSQGQTTEVTKLPPNPRRKGPNP 31
           E   V+ GQ  ++   PP P+RK  NP
Sbjct: 77  EAKGVAMGQALDIAIPPPRPKRKPNNP 103


>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 4  LEVTQVSQGQTTEVTKLPP 22
          +EV Q+ Q +TT+V  LPP
Sbjct: 53 IEVKQIDQEKTTDVNDLPP 71


>At5g59790.1 68418.m07495 expressed protein
          Length = 423

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 11  QGQTTEVTK--LPPNPRRKGPNPLESILKAD 39
           + Q+TE+++  + P P    P  LE+++KAD
Sbjct: 236 ENQSTELSRDEISPPPSDSSPETLENLIKAD 266


>At2g32850.2 68415.m04025 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 4   LEVTQVSQGQTTEVTKLPPNPRRKGPNPLESILKAD 39
           ++ T V  G +   TK  P PRR  P P  S  ++D
Sbjct: 313 MQSTGVHDGSSKSATKPSPAPRRSPPPPPPSSGESD 348


>At2g32850.1 68415.m04024 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 650

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 4   LEVTQVSQGQTTEVTKLPPNPRRKGPNPLESILKAD 39
           ++ T V  G +   TK  P PRR  P P  S  ++D
Sbjct: 313 MQSTGVHDGSSKSATKPSPAPRRSPPPPPPSSGESD 348


>At3g45440.1 68416.m04905 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and PS00108: Serine/Threonine protein
           kinases active-site signature, PROSITE:PS00108
          Length = 669

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 13  QTTEVTKLPPNPRRKGPNPLESIL 36
           QT +VTKLP  PR +  N   S++
Sbjct: 264 QTLDVTKLPRVPRHRAKNKGPSVV 287


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
          identical to myb-related transcription factor (CCA1)
          GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 12 GQTTEVTKLPPNPRRKGPNP 31
          GQ  ++   PP P+RK  NP
Sbjct: 2  GQALDIAIPPPRPKRKPNNP 21


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,022,884
Number of Sequences: 28952
Number of extensions: 24135
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 7
length of query: 40
length of database: 12,070,560
effective HSP length: 21
effective length of query: 19
effective length of database: 11,462,568
effective search space: 217788792
effective search space used: 217788792
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)