Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000729-TA|BGIBMGA000729-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
         (172 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25727.1 68416.m03203 hypothetical protein                          30   0.97 
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi...    29   1.7  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    29   2.2  
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    28   3.9  
At2g33310.1 68415.m04082 auxin-responsive protein / indoleacetic...    28   3.9  
At5g22980.1 68418.m02686 serine carboxypeptidase III, putative s...    27   6.8  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    27   6.8  
At5g23790.1 68418.m02793 galactinol synthase, putative similar t...    27   9.0  
At2g33310.2 68415.m04083 auxin-responsive protein / indoleacetic...    27   9.0  

>At3g25727.1 68416.m03203 hypothetical protein
          Length = 153

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKIT-ELWSNFVKHGDPTPPNFKGE-ITWPPVSA 124
           L NC P+ +V   VN  +   D +F+ K   E+W+ F      +PP+  G+ + W     
Sbjct: 20  LNNCLPVSNV---VNLQDDAEDDLFLWKFAREVWNYFTSRAHVSPPHLFGDGVRWLKNPC 76

Query: 125 NKYNMLLI 132
           +  N+ +I
Sbjct: 77  HDKNVTMI 84


>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 738

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 27  NNVFLYKFNYEGYFNAFKATSIGESNAKVKGASS--GDEICYLFNCEPLVDVYVKVNKDE 84
           NNV   ++     F AF   S+ +   +  G +   G E+  +F    LVD+YVK  K  
Sbjct: 159 NNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTR 218

Query: 85  KHR---DRVFIKK---ITELWSNFVKHGDPT 109
           + +   DRV  K    IT L   + + G+ T
Sbjct: 219 EAKLVLDRVEEKDVVLITALIVGYSQKGEDT 249


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
          polygalacturonase (pectinase) family protein similar to
          polygalacturonase PG1 [Glycine max] GI:5669846;
          contains PF00295: Glycosyl hydrolases family 28
          (polygalacturonases)
          Length = 373

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 1  MFLKYVSDLHVYPIFKFVKTHYKKFKNNVFLYKFNYEGYFNAFKATS 47
          MFL ++  L V+  F+ V++H+  + +N      NY    + F   S
Sbjct: 6  MFLNFLLSLTVFHTFQSVQSHFSLYNDNNIFNVLNYGAIGDGFSDDS 52


>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 91  FIKKITELWSNFVKHGDPTPPNFKGEITWPPVSANKYNMLLIGNKFRIIEPRK 143
           F   ++ ++ N+V + +P     KG  TWPP S   YN +L      +  P K
Sbjct: 228 FTSIVSPIFLNWVNNENPEGKPLKGFPTWPPES--MYNPILSAFTAGLFLPNK 278


>At2g33310.1 68415.m04082 auxin-responsive protein / indoleacetic
           acid-induced protein 13 (IAA13) identical to SP|Q38831
           Auxin-responsive protein IAA13 (Indoleacetic
           acid-induced protein 13) {Arabidopsis thaliana}
          Length = 246

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 105 HGDPTPPNFKGEITWPPVSANKYNMLLIGNKFRIIEPRKEQE 146
           H   +PP     + WPP+ +++ N L+  N       R+E+E
Sbjct: 65  HAGSSPPRSSQVVGWPPIGSHRMNSLV--NNQATKSAREEEE 104


>At5g22980.1 68418.m02686 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 505

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 17  FVKTHYKKFKNNVFLYKFNYEGYFNAFKATSIGESNAKVKG 57
           F K H K  KN+ F+   +Y G++    A+ +   N K +G
Sbjct: 210 FFKEHPKFVKNDFFITGESYAGHYIPALASRVHSGNKKKEG 250


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 111 PNFKGEITWPPVSANKYNMLLIGNKFR 137
           P+ KG +TW   + N Y+M L    F+
Sbjct: 440 PHVKGMVTWTAYAPNCYHMCLTDGNFK 466


>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
           transferase family 8
          Length = 333

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 79  KVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNF-KGEITWPPVSANKYNMLLIGNKFR 137
           K ++ E+H DR  IK + + W    +       NF + E    PV+A   +  L+G+   
Sbjct: 267 KFDEAEEHMDREDIKMLVKKWWEIYEDSSLDYKNFVETESKLNPVTATLASKKLVGDVLT 326

Query: 138 IIEP 141
            + P
Sbjct: 327 SLAP 330


>At2g33310.2 68415.m04083 auxin-responsive protein / indoleacetic
           acid-induced protein 13 (IAA13) identical to SP|Q38831
           Auxin-responsive protein IAA13 (Indoleacetic
           acid-induced protein 13) {Arabidopsis thaliana}
          Length = 247

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 105 HGDPTPPNFKGEIT-WPPVSANKYNMLLIGNKFRIIEPRKEQE 146
           H   +PP    ++  WPP+ +++ N L+  N       R+E+E
Sbjct: 65  HAGSSPPRSSSQVVGWPPIGSHRMNSLV--NNQATKSAREEEE 105


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,790,647
Number of Sequences: 28952
Number of extensions: 210275
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 9
length of query: 172
length of database: 12,070,560
effective HSP length: 76
effective length of query: 96
effective length of database: 9,870,208
effective search space: 947539968
effective search space used: 947539968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)