GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000729-TA|BGIBMGA000729-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    30   0.21 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    29   0.50 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   2.0  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   4.6  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   6.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   6.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   8.1  

>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 93  KKITELWSNFVKHGDPTP-PNFKGEITWPP 121
           K+I +LW   V HGDP   PNFK +I   P
Sbjct: 315 KEIKQLWFERVLHGDPARLPNFKVKIEDAP 344


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 21/86 (24%), Positives = 35/86 (40%)

Query: 73  LVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGEITWPPVSANKYNMLLI 132
           L DVYVKVN D    D    K   E  S  + +  P   + K    +  +       L +
Sbjct: 218 LYDVYVKVNADATEEDEKIQKDKAEAESKGLPYTPPLSLHDKAREFFKRMEDGDEESLKV 277

Query: 133 GNKFRIIEPRKEQEMFSFWSDIYEKY 158
             +FR +   K ++ +   +  Y++Y
Sbjct: 278 WARFRDLSITKLKDTYDRLNIHYDEY 303


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 93  KKITELWSNFVKHGDPTPPNFKGEITWP 120
           +K+TE W  + K   P PP+   E  WP
Sbjct: 121 EKVTEAWFAYAKKNLPEPPSSMSE--WP 146


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 31  LYKFNYEGYFNAFKATSIGESNAKVK 56
           LY+ +  G + A+KAT+IG+S+   K
Sbjct: 146 LYQVDPSGTYFAWKATAIGKSSTAAK 171


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 49  GESNAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDP 108
           G SN  +   + GD++ +  N +  V    K  +++  +    +K      S F     P
Sbjct: 234 GPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPP 293

Query: 109 TPPNFKGEITWPP 121
           TPP+ + E +  P
Sbjct: 294 TPPSEEDEESESP 306


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 138 IIEPRKEQEMFSFWSDIYEKYFNPKTCHNY 167
           ++E    QE+F  WS +   YF    C  +
Sbjct: 584 LLEENTFQELFLHWSPLVRAYFQRLVCWRF 613


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 82  KDEKHRDRVFIKKITELWSNFVKHGD 107
           KDE   D   ++K+ +L +N V++GD
Sbjct: 753 KDEPWMDATKVRKLKKLLTNAVENGD 778


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 32  YKFNYEGYFNAFKATSIGESNAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVF 91
           Y  NY G  +  +     + N+     S    + +  N      +++ +N+ EK  +R F
Sbjct: 713 YVRNYRGNIDELEKAESPQQNSDYANDSVQHLLDFDINNMDETAIHMLMNQLEKKENRTF 772

Query: 92  IKK 94
           IKK
Sbjct: 773 IKK 775


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,139
Number of Sequences: 5004
Number of extensions: 42296
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 8
length of query: 172
length of database: 2,362,478
effective HSP length: 68
effective length of query: 104
effective length of database: 2,022,206
effective search space: 210309424
effective search space used: 210309424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)