GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000729-TA|BGIBMGA000729-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41...    29   2.0  
12_02_0987 - 25060266-25060461,25061124-25063351                       29   2.7  
08_02_1408 + 26860640-26860701,26860811-26860919,26861566-268617...    28   3.5  
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313...    27   6.2  
04_01_0475 - 6196747-6197065,6197193-6197236,6198649-6198721,619...    27   6.2  
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    27   8.1  

>09_01_0020 +
           413723-413738,413867-413934,414849-415144,415275-415400,
           415484-415566,416514-416628,416755-416847,416963-417021,
           417609-417684,417812-417901,418050-418202,418294-418480,
           418752-418839,419077-419125,419233-419329
          Length = 531

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 29  VFLYKFNYEGYFNAFKATSIGESNAKVKGASSGDEICYLFNCEPLVD 75
           V +++  +E   N  K   + E NAK K AS G ++C  + C  L++
Sbjct: 420 VEVHRCPFEVLDNGIKVEHLVEGNAKAKVASKGKQVCVRY-CGRLIN 465


>12_02_0987 - 25060266-25060461,25061124-25063351
          Length = 807

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 107 DPTPPNFK-GEIT-WPPVSANKYNMLLIGNKFRIIEPRKEQEMF--SFWSDIYEKY--FN 160
           DP PP  +  E+  WPP   N    LLI     I+  RK    F  + WS++ E++  F 
Sbjct: 297 DPWPPPTEWAELELWPPPHENDILPLLINGFTHILVDRKAISKFWKAIWSELGEEWSLFV 356

Query: 161 PK 162
           PK
Sbjct: 357 PK 358


>08_02_1408 +
           26860640-26860701,26860811-26860919,26861566-26861739,
           26861843-26861923,26862333-26862536,26862626-26862811
          Length = 271

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/30 (30%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 75  DVYVKVNKD-EKHRDRVFIKKITELWSNFV 103
           D  +K+ KD +K++D+++   ++E+W++ V
Sbjct: 215 DELLKIEKDADKYKDKIYKTAVSEIWNDLV 244


>10_07_0117 +
           13028336-13028404,13029073-13029174,13031108-13031367,
           13031813-13031882,13031935-13031966,13032736-13032823,
           13033431-13033742,13033822-13033896,13034018-13034559,
           13034936-13035044,13035713-13035892,13036243-13036404
          Length = 666

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 71  EPLVDVYVKVNKDEKHRDRVF-IKKITELWSNFVKHGDPTPPNFKGEITWPPVSANKYNM 129
           E    V+V V +DE   D  + I  I E   +  + G   PPN    +T     +N+Y  
Sbjct: 487 EMFESVFVLV-EDEMMADPAYLISIIMEFLRSVSRAGLKAPPNLFVMMTTLLARSNRYPE 545

Query: 130 LLIGNKFRIIEPRKEQEM 147
           + +    +I+EP KE  M
Sbjct: 546 IALFVSNKILEPSKELAM 563


>04_01_0475 -
           6196747-6197065,6197193-6197236,6198649-6198721,
           6198823-6198933,6199023-6199196,6199285-6199466
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 74  VDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKG-EITWPPVSANKYNMLLI 132
           V VY  +NK+EK  D+V +K I   W  F +    T     G    +PP+     N   +
Sbjct: 134 VTVYDSMNKEEKIFDKV-VKLIDRAWDRFRQLVRGTWKEKLGRRFHFPPLRILNINKCAL 192

Query: 133 GNKF 136
            +KF
Sbjct: 193 SSKF 196


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 44  KATSIGESNA--KVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSN 101
           +  S+ E NA   +K  S  D+I Y   C+ L  + +       H DR+  ++I +LWS 
Sbjct: 317 QVASLSEENAFALLKADSPDDQITYSSFCQALCQLGMV------HPDRLNSEEIKDLWSE 370

Query: 102 FVKHGD 107
               GD
Sbjct: 371 ADHDGD 376


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,553,086
Number of Sequences: 37544
Number of extensions: 230142
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 14,793,348
effective HSP length: 77
effective length of query: 95
effective length of database: 11,902,460
effective search space: 1130733700
effective search space used: 1130733700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)