GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000729-TA|BGIBMGA000729-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
         (172 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  44   9e-05
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   1e-04
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   6e-04
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.031
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  30   1.2  
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   29   2.1  
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.6  
SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 27   8.3  
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 39  YFNAFKATSIGESNAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHR-DRVFIKKITE 97
           Y   F   S   S  K KG    D+  Y F   P +D+   + + E    DR     I  
Sbjct: 432 YLYVFSHRSKNRSIPKWKGVGHKDDTPYEFGF-PFLDLDKALTQQEYDDVDRNVSNYIIT 490

Query: 98  LWSNFVKHGDPTPPNFKGEITWPPVSANKYNMLLIGNKFRIIEPRKEQEMFSFWSDIYEK 157
            ++NF K G PTP    G ITW   +      + I  + R IE    ++  +FW+  Y K
Sbjct: 491 FFTNFAKTGHPTPEPVAG-ITWSQYNETYPAYMNITAQPR-IEYNFHEKSMAFWNSYYPK 548

Query: 158 YFNPKTCH 165
                +C+
Sbjct: 549 LLETTSCY 556


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 51  SNAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTP 110
           +N+++K A+      Y F        ++   K++++   + +    +L+SNF+K GDPTP
Sbjct: 516 NNSRLKWATHSSNADYTFGAPIHNATHIAYTKEDRNVSHLLL----QLYSNFLKFGDPTP 571

Query: 111 PNFKGEITWPPVSANKYNMLLIGNKFRIIEPRKEQEMFSFWSDIYEKYFNPKTCHN 166
              +G ITW   S  + + L +  + +I + + E    + W+    K  N    HN
Sbjct: 572 QPVQG-ITWERYSQRQGDYLKVQARPQIAD-KYEPRRVALWNYYIPKIRNFSCQHN 625


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 73  LVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGEITWPPVSANKYNMLLI 132
           L+D+ ++  K  +  +  FI    ++W+NF  HG P       E+TWP  +A     L I
Sbjct: 504 LIDIGIR--KGIQGPEAGFILNTLKIWANFATHGKPDAG--LAEVTWPEYTAATRQYLSI 559

Query: 133 GNKFRIIEPRKEQEMFSFWSD 153
              F  +E +   E  +FW+D
Sbjct: 560 KPNF-TVESKLRAEHVAFWND 579


>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 39  YFNAFKATSIGESNAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKK-ITE 97
           Y   F   S  ES    +GA+  D++ +LF          + +    H++ + I + +  
Sbjct: 473 YMYVFDHCSAAES---WRGAAHADDLRFLF----------RNSTQASHKEELDISQAMVT 519

Query: 98  LWSNFVKHGDPTPPNFKGEITWPPVSANKYNMLLIGNKFRIIEPRKEQ--EMFSFWSDIY 155
           LW+NF K+G+PTP        W   + +    L IG    ++   K       +FW+  Y
Sbjct: 520 LWTNFAKYGNPTPFGPVYGSLWNEFNRSDQVYLSIGGPKGVLSMGKNYHGSRTAFWNYFY 579

Query: 156 EKYFN 160
            K  N
Sbjct: 580 PKLMN 584


>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 88  DRVFIKKITELWSNFVKHGDPTPPNFKGEITWPPVSAN 125
           D  F + + +LW+NF K GDP  P       WP   A+
Sbjct: 283 DANFSRDVIQLWTNFAKTGDPNKPR-NASFVWPAYDAH 319


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 57  GASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGE 116
           G   GD   Y F   PL+     +  ++   DR     +  ++ NF K+G+PTP    G 
Sbjct: 449 GVVHGDTTAYKFGV-PLLSAQQHIYDEQ---DRNVSDMLVTMFVNFAKYGNPTPSPVHG- 503

Query: 117 ITWPPVSANKYNMLLIGNKFRIIEPRKEQEMFSFWSDIY 155
             W   + +    L I     ++  +      +FW++ +
Sbjct: 504 TNWERFNTSNKAYLKIQPNV-VLASKFHPARMAFWNEYF 541


>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 123 SANKYNMLLIGNKFRIIEPRKEQEM--FSFWSDIYEKYFNPKTCHNY 167
           +AN+Y+  L+ N+F     R   ++    FWS  YE+Y  P   HN+
Sbjct: 244 NANRYDKFLVVNRFHSDMCRYHSDLTRHHFWSRKYERYGTP---HNH 287


>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 58  ASSGDEICYLFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGEI 117
           A+ G +  YLF  +  +D+   VN D    DR F K+     +NFVK GD   PN     
Sbjct: 447 ATHGADNSYLFGGD--LDM-TWVN-DSLKADREFAKRFRTFIANFVKTGD---PNGATVP 499

Query: 118 TWP 120
           TWP
Sbjct: 500 TWP 502


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 52   NAKVKGASSGDEICYLFNCEPLVDVYVKVNKDEKHR 87
            N + +    GD I +L+N E L DVY  V K  + R
Sbjct: 1587 NWQAEKTKVGDRISFLYNNEILSDVYFLVGKGPQRR 1622


>SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 77  YVKVNKDEKHRDRVFIKKITELWSN 101
           Y K++KDEK R R+F    TE  +N
Sbjct: 590 YRKLSKDEKRRRRIFTSAATESQTN 614


>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 104 KHGDPTPPNFK----GEITWPPVSANKYNMLLIGNKFRIIEPRKEQEMFSFWSDIY 155
           + G+PT   FK     ++ W  +     +     NK ++  P  ++ MF FW + +
Sbjct: 232 REGEPTIHTFKESRNSDVRWFAIPKQFVDKAHKDNKCKVFSPDFKERMFQFWFNTF 287


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 28  NVFLYKFNYEGYFNAFKATSIGESNAKVKGASS 60
           N ++Y FN+  Y N FK     +SN    G  S
Sbjct: 665 NPYIYAFNHRSYRNEFKKILSWKSNESASGYPS 697


>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 65  CYLFNCEPLVDVYVKVNKDEKHRDR 89
           CY  + E L  +Y  V+K++K RDR
Sbjct: 620 CYSKSIEVLPSIYATVDKEKKKRDR 644


>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 64  ICYL-FNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVK 104
           +CY+  NC  +    +++ K     D V   KITE++S F+K
Sbjct: 178 LCYIPVNCFIICHCLLQICKLSTSSDHVLPVKITEIYSMFLK 219


>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 151 WSDIYEKYFNPKT 163
           WS IY K+F+PKT
Sbjct: 35  WSSIYPKFFSPKT 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,600,810
Number of Sequences: 59808
Number of extensions: 273750
Number of successful extensions: 577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 15
length of query: 172
length of database: 16,821,457
effective HSP length: 77
effective length of query: 95
effective length of database: 12,216,241
effective search space: 1160542895
effective search space used: 1160542895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)