GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000729-TA|BGIBMGA000729-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
         (172 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    26   0.17 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   1.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   1.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   1.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   1.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.6  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGEITWPPVSANK 126
           +F  E + +V  K+NK E+H D V +  I +  +   K+   +  + +        ++++
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNIKKSGNESKKYA-TSSNSLRSRTHGFQHTSSR 230

Query: 127 YNMLLIGNKFRIIEPRKEQEMFSFWSDIYEKYFNPKTCH 165
           Y+     ++ R  E RK+   +    +  EK+   +T H
Sbjct: 231 YSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSH 269


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           LF  E + +V  K+NK E+H D V +  I
Sbjct: 173 LFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           LF  E + +V  K+NK E+H D V +  I
Sbjct: 162 LFEREEIKNVLTKINKIEEH-DTVLVVNI 189


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           LF  E + +V  K+NK E+H D V +  I
Sbjct: 173 LFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           LF  E + +V  K+NK E+H D V +  I
Sbjct: 162 LFEREEIKNVLTKINKIEEH-DTVLVVNI 189


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKITELWSNFVKHGDPTPPNFKGEITWPPVSANK 126
           +F  E + +V  K+NK E+H D V +  I +  +   K+   +  + +        ++++
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNIKKSGNESKKYA-TSSNSLRSRTHGFQHTSSR 230

Query: 127 YNMLLIGNKFRIIEPRKEQEMFSFWSDIYEKYFNPKT-CHNY 167
           Y+     ++ R  E RK+   +    +  EK    +T C  Y
Sbjct: 231 YSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRY 272


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 162 IFEREEIKNVLTKINKIEEH-DTVLVVNI 189


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 162 IFEREEIKNVLTKINKIEEH-DTVLVVNI 189


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 162 IFEREEIKNVLTKINKIEEH-DTVLVVNI 189


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  LFNCEPLVDVYVKVNKDEKHRDRVFIKKI 95
           +F  E + +V  K+NK E+H D V +  I
Sbjct: 173 IFEREEIKNVLTKINKIEEH-DTVLVVNI 200


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 140 EPRKEQEMFSFWSDIYEKYFN 160
           EPR ++E+     D  E+YF+
Sbjct: 58  EPRSKEEILLHAKDFLEQYFS 78


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like
          receptor 2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/17 (29%), Positives = 14/17 (82%)

Query: 71 EPLVDVYVKVNKDEKHR 87
          EP++D+ ++++K+ K +
Sbjct: 3  EPMIDITMEISKNHKEQ 19


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 12  YPIFKFVKTHYKKFKNNVFLY 32
           + I+K +  +Y K+K N+  Y
Sbjct: 418 FSIYKTILDYYHKYKENLPKY 438


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 12 YPIFKFVKTHYKKFKNNVFLY 32
          + I+K +  +Y K+K N+  Y
Sbjct: 44 FSIYKTILDYYHKYKENLPKY 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,475
Number of Sequences: 429
Number of extensions: 2833
Number of successful extensions: 22
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 172
length of database: 140,377
effective HSP length: 54
effective length of query: 118
effective length of database: 117,211
effective search space: 13830898
effective search space used: 13830898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)