Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000728-TA|BGIBMGA000728-PA|IPR001594|Zinc finger,
DHHC-type
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    25   0.73 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.0  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 177 VLFMAIICVSVLFALGTLTVSHGRNISRGETSIESHINMRIRKSQPNFKN 226
           +LF+  + ++++    T T SHG    +  TS+E   N    +S   F N
Sbjct: 8   ILFILSLTITIVMCQ-TFTYSHGWTNGKRSTSLEELANRNAIQSDNVFAN 56


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query: 149 HFPREHDLTVPPFTE 163
           H P   DL VPP TE
Sbjct: 135 HRPDTKDLPVPPLTE 149


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 68 WLNNCVGYY 76
          W+ +C+GYY
Sbjct: 66 WIFSCIGYY 74


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 181 AIICVSVLFALGTLTVSHGRNISRGETSIESHIN 214
           A + V  L ALG   V H + I    T++ + ++
Sbjct: 955 ARVTVQELTALGVTLVGHQKKIMNSVTALRAQMS 988


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,890
Number of Sequences: 429
Number of extensions: 4287
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)