Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000728-TA|BGIBMGA000728-PA|IPR001594|Zinc finger,
DHHC-type
(275 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12) 66 2e-11
SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27) 62 4e-10
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23) 57 2e-08
SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12) 53 2e-07
SB_3947| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 29 5.5
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92) 28 9.6
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 19 DNFAKYLGKGAMITEAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNA 78
D LG +++ + C C PPR +HC VCD C+L DHHC + CVG+ N
Sbjct: 89 DTTGAKLGMPSVLKPGWAYCPFCQLNSPPRAYHCHVCDICVLRRDHHCIFAGKCVGHSNY 148
Query: 79 RYFYLYMVYMVAGVTF 94
RY+ Y+ G +
Sbjct: 149 RYYLFLAFYLWLGALY 164
>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
Length = 341
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 37 ICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTFVI 96
+C KC + THHCS C C+ M HHCP+ NNC+G N Y+Y +++ V G+ +
Sbjct: 127 MCSKCSRIRSSGTHHCSWCHTCVEMMCHHCPFTNNCIGLRNYIYYYSFLLQAVVGLGYAC 186
Query: 97 VAGI 100
I
Sbjct: 187 YLAI 190
>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
Length = 559
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVA---GVTF 94
C C KP R+ HCS+C CI DHHC W+NNC+G N +F ++ A VTF
Sbjct: 54 CPTCELDKPARSKHCSLCKACINRFDHHCSWVNNCIGANNYGFFIGFIFTAAALCIYVTF 113
Query: 95 VIV 97
+++
Sbjct: 114 LVM 116
>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
Length = 393
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLY--------MVYMV 89
C C P + HC +C+ C+L +DHHC +L CVGY N R F ++ M+++
Sbjct: 227 CYHCELVAPIFSKHCRLCNHCVLAIDHHCLFLMCCVGYKNHRAFVVFMSLVLLSQMLFVR 286
Query: 90 AGVTFVIVAGIDLGYQVLWVND 111
A VTFV + G+ L +L + D
Sbjct: 287 AAVTFVNLRGLLLFGSMLTIAD 308
>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
Length = 288
Score = 53.2 bits (122), Expect = 2e-07
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWL 69
C C +PPR HCS+CD C+ DHHCPW+
Sbjct: 147 CFTCKIFRPPRASHCSMCDNCVERFDHHCPWI 178
>SB_3947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 172 WKRKAVLFMAIICVSVLFALGTLTVSHGRNISRGETSIESHIN 214
++ + +F+ ++C +V ALG LT+ H + I+ G+TSIE +IN
Sbjct: 40 FEHNSSVFVFMLCSAVTLALGLLTLWHAKLIADGQTSIELYIN 82
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 131 NQSGILVPVKVIDEYDSEHFPREHDLTV--PPFTEAQRITAH 170
NQS + VP+ ++++ DS++F DL V P +R H
Sbjct: 158 NQSAVAVPMALVNKTDSDYFDNRDDLAVLHSPVPTVERAPTH 199
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 202 ISRGETSIESHINMRIRKSQPNFKNPYDFGKKKNWRLFLGLIQGRTFLRHVLLPSSHKPA 261
+S G T + S ++++ + QP+ Y + FL L G FL PS++ P
Sbjct: 1114 LSSGITDMNS-LSLKFKTLQPSGLLVYSGDVSTGYYFFLALFHGNLFLASTKTPSAYTPL 1172
Query: 262 GT 263
T
Sbjct: 1173 TT 1174
>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
Length = 829
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 49 THHCS---VCDKCILNMDHHCPWL-NNCV 73
THHC+ C C+L D +C W + CV
Sbjct: 347 THHCAHYTSCTTCVLTRDPYCGWSEDKCV 375
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 144 EYDSEHFPREHDLTVPPFTE 163
EYDSE FPR+ DL V E
Sbjct: 22 EYDSEPFPRQRDLAVKRIAE 41
>SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 131 NQSGILVPVKVIDEYDSEHFPREHDLTVPPF 161
NQS VP+ ++++ DS++F DL F
Sbjct: 93 NQSAAAVPMALVNKTDSDYFDNRDDLACASF 123
>SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)
Length = 174
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 32 TEAASICKKCISPKPPRTHHCSVC 55
+ A C C P R HHC++C
Sbjct: 90 SSACFFCHDCQMNSPGRAHHCNLC 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,222
Number of Sequences: 59808
Number of extensions: 457931
Number of successful extensions: 1459
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 15
length of query: 275
length of database: 16,821,457
effective HSP length: 81
effective length of query: 194
effective length of database: 11,977,009
effective search space: 2323539746
effective search space used: 2323539746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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