Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000728-TA|BGIBMGA000728-PA|IPR001594|Zinc finger,
DHHC-type
(275 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical... 88 7e-18
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 87 1e-17
Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z22180-10|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z22180-9|CAD54147.2| 403|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z69634-9|CAA93457.2| 431|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 77 2e-14
Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical pr... 76 2e-14
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 75 6e-14
Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 66 3e-11
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 66 3e-11
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 65 6e-11
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 64 1e-10
U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical pr... 62 3e-10
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 54 8e-08
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z54282-1|CAA91056.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 0.68
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 31 0.68
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 30 1.6
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 30 1.6
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 30 1.6
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 30 1.6
Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 29 2.7
>AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical
protein F33D11.12 protein.
Length = 260
Score = 87.8 bits (208), Expect = 7e-18
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYM 88
C+KC S KP R HHCSVC++CI MDHHCPW+NNCVG N ++F L+ +Y+
Sbjct: 86 CQKCASIKPDRAHHCSVCERCIRRMDHHCPWVNNCVGEGNQKFFVLFTMYI 136
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 87.0 bits (206), Expect = 1e-17
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 33 EAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGV 92
E S C KC K HHCSVC+KC+L MDHHC W+N CVG +N R+F+L++ +
Sbjct: 100 EGDSFCSKCNYWKSDNAHHCSVCEKCVLGMDHHCIWINQCVGLHNHRHFFLFIANLTLAA 159
Query: 93 TFVIVAG 99
+I+AG
Sbjct: 160 ATIIIAG 166
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 174 RKAVLFMAIICVSVLFALGTLTVSHGRNISRGETSIESHINMRIRKSQPNFKNPYDFGKK 233
R +V+F ++ +L +G LT + IS G T I+ ++ + K + + + G K
Sbjct: 205 RTSVVFCYLLSGILLVMVGGLTSWNIYLISIGCTYID-YLKLTGSKKNTSARKRLNKGFK 263
Query: 234 KNWRLFLGLIQGRTFLRHVLLPSSHKP 260
NWR FLGL + RTF + V++P++ P
Sbjct: 264 ANWRNFLGLRRNRTFFKCVIMPTALPP 290
>Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical
protein C17D12.1b protein.
Length = 240
Score = 86.6 bits (205), Expect = 2e-17
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 36 SICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTFV 95
++C +C S +PPR HHC VC +C+ MDHHCPW+NNCVG YN ++F ++ Y+ A +
Sbjct: 51 TMCTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYS 110
Query: 96 IV 97
++
Sbjct: 111 LL 112
>Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical
protein C17D12.1a protein.
Length = 302
Score = 86.6 bits (205), Expect = 2e-17
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 36 SICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTFV 95
++C +C S +PPR HHC VC +C+ MDHHCPW+NNCVG YN ++F ++ Y+ A +
Sbjct: 113 TMCTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYS 172
Query: 96 IV 97
++
Sbjct: 173 LL 174
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 85.0 bits (201), Expect = 5e-17
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVY 87
C KC KP R+HHCS+C++C+L DHHCPW+NNCV + N +YF L++ Y
Sbjct: 136 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAY 185
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 85.0 bits (201), Expect = 5e-17
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVY 87
C KC KP R+HHCS+C++C+L DHHCPW+NNCV + N +YF L++ Y
Sbjct: 134 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAY 183
>Z22180-10|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 85.0 bits (201), Expect = 5e-17
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVY 87
C KC KP R+HHCS+C++C+L DHHCPW+NNCV + N +YF L++ Y
Sbjct: 136 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAY 185
>Z22180-9|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 85.0 bits (201), Expect = 5e-17
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVY 87
C KC KP R+HHCS+C++C+L DHHCPW+NNCV + N +YF L++ Y
Sbjct: 134 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAY 183
>Z69634-9|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 83.0 bits (196), Expect = 2e-16
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAG 91
C C K PR+HHCS CD+C + MDHHCPW+NNCVG+ N +YF ++ + V G
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVG 161
Score = 32.3 bits (70), Expect = 0.39
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 18/90 (20%)
Query: 176 AVLFMAIICVSVLFALGTLTVSHGRNISRGETSIESHI-----NMR----------IR-- 218
A++F + ++V AL L ++ R + R IE +I NMR I
Sbjct: 202 ALVFAIAMAIAVALALTFLFITQLRYVIRNRNGIEDYIHGKSLNMRKVHEGDDEEEIEWI 261
Query: 219 KSQPNFKNPYDFGKKKNWR-LFLGLIQGRT 247
KS + PYD G K+N R +F+G+ GRT
Sbjct: 262 KSLGEWTYPYDLGWKRNLREVFIGIFDGRT 291
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 83.0 bits (196), Expect = 2e-16
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAG 91
C C K PR+HHCS CD+C + MDHHCPW+NNCVG+ N +YF ++ + V G
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVG 161
Score = 32.3 bits (70), Expect = 0.39
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 18/90 (20%)
Query: 176 AVLFMAIICVSVLFALGTLTVSHGRNISRGETSIESHI-----NMR----------IR-- 218
A++F + ++V AL L ++ R + R IE +I NMR I
Sbjct: 202 ALVFAIAMAIAVALALTFLFITQLRYVIRNRNGIEDYIHGKSLNMRKVHEGDDEEEIEWI 261
Query: 219 KSQPNFKNPYDFGKKKNWR-LFLGLIQGRT 247
KS + PYD G K+N R +F+G+ GRT
Sbjct: 262 KSLGEWTYPYDLGWKRNLREVFIGIFDGRT 291
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 76.6 bits (180), Expect = 2e-14
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 31 ITEAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVA 90
IT C C +PPR+ HCSVC++CI DHHCPW++NCVG N RYF+ ++ +
Sbjct: 98 ITVRMKWCVTCKFYRPPRSSHCSVCNRCIETFDHHCPWVHNCVGKRNYRYFFFFLCSLSI 157
Query: 91 GVTFV 95
+ +V
Sbjct: 158 HMMYV 162
>Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical
protein F59C6.2 protein.
Length = 239
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 32 TEAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYM-VA 90
T + S C KC + K P T HC CDKCI MDHHCP + CVG +N +F+L++ Y+ +A
Sbjct: 36 TPSDSFCIKCNNWKGPSTSHCKACDKCIYRMDHHCPHIGQCVGAHNQSHFFLFLFYLQIA 95
Query: 91 GVTFVIVA 98
F ++A
Sbjct: 96 TGLFFLMA 103
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 74.9 bits (176), Expect = 6e-14
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTFVIV 97
C C +PPR HC++CD C+L DHHCPW+ NC+G N YFY ++ + V ++
Sbjct: 166 CTTCRLYRPPRCSHCAICDNCVLMFDHHCPWVGNCIGLRNYTYFYRFVFCLSILVIYLFA 225
Query: 98 AGI 100
+ +
Sbjct: 226 SAV 228
>Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical
protein AC3.10 protein.
Length = 351
Score = 73.7 bits (173), Expect = 1e-13
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVY 87
C +C KP R HCS C KC + DHHCPW+N CV + N +YF LY++Y
Sbjct: 156 CYECGHIKPDRARHCSSCGKCCIKYDHHCPWINMCVTHVNYKYFLLYIIY 205
>U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical
protein R13F6.5 protein.
Length = 244
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 37 ICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTFVI 96
+C+ C KPPR HHC C+ C+ MDHHCP L C+ N +YF L++V+ + F I
Sbjct: 83 VCQLCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCIHSGNHKYFLLFLVWPLQLAIFTI 142
Query: 97 VAG 99
G
Sbjct: 143 WHG 145
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 29 AMITEAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYM 88
A I C C K T HC+VC C+ N DHHCPWLN+CV N R F ++++ +
Sbjct: 41 AGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVISV 100
Query: 89 VAGVTFVIVAGIDLGYQVLWVNDTG 113
V+ I Y +L + D G
Sbjct: 101 --SVSSAIYCMATSHYALLQIEDHG 123
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 29 AMITEAASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYM 88
A I C C K T HC+VC C+ N DHHCPWLN+CV N R F ++++ +
Sbjct: 149 AGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVISV 208
Query: 89 VAGVTFVIVAGIDLGYQVLWVNDTG 113
V+ I Y +L + D G
Sbjct: 209 --SVSSAIYCMATSHYALLQIEDHG 231
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 64.9 bits (151), Expect = 6e-11
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYF 81
C C S P R HHC VCD CIL DHHC + CVG++N RYF
Sbjct: 105 CHSCHSMSPLRAHHCPVCDVCILRRDHHCSFGAVCVGHFNQRYF 148
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 63.7 bits (148), Expect = 1e-10
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLY 84
C C PK +HHCS CDKC+ DHHCPW++ CV N R F +
Sbjct: 543 CFTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIHKCVYRKNLRAFVFF 589
>U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical
protein K02G10.1 protein.
Length = 281
Score = 62.5 bits (145), Expect = 3e-10
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 35 ASICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMVYMVAGVTF 94
+ C C P R+HHC +C C+L DHHC CVG N RYF +++ + G+T
Sbjct: 130 SKFCFTCNKEAPQRSHHCPLCKMCVLRKDHHCFITGACVGLGNQRYFMVFLFWCAIGLTI 189
Query: 95 VI 96
+
Sbjct: 190 AM 191
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 54.4 bits (125), Expect = 8e-08
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 36 SICKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNCVGYYNARYFYLYMV 86
S C C T HC C+ CI + DHHC WLNNC+G N R F + ++
Sbjct: 37 SFCSICEVRTYRETKHCKRCNFCIDDFDHHCVWLNNCIGGKNYRPFVVLVI 87
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 38 CKKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNC 72
C+ C S + + +HC CDKC+ HC C
Sbjct: 421 CQACTSVEQGKWNHCEKCDKCVKPRYVHCAQCARC 455
>Z54282-1|CAA91056.1| 1203|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1203
Score = 31.5 bits (68), Expect = 0.68
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 50 HHCSVCDKCILNMDHHCPWLNNCV 73
+HC++C + N H W+N+C+
Sbjct: 523 YHCAICKIIVYNRSHEEHWINDCI 546
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 31.5 bits (68), Expect = 0.68
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 50 HHCSVCDKCILNMDHHCPWLNNCV 73
+HC++C + N H W+N+C+
Sbjct: 523 YHCAICKIIVYNRSHEEHWINDCI 546
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 24 YLGKGAMITEAAS-ICKKCISPKPPRTHHCSVCDKCILNMD 63
+L +G+ + + +CKKC + + +CD C NMD
Sbjct: 652 FLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMD 692
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 24 YLGKGAMITEAAS-ICKKCISPKPPRTHHCSVCDKCILNMD 63
+L +G+ + + +CKKC + + +CD C NMD
Sbjct: 652 FLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMD 692
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 24 YLGKGAMITEAAS-ICKKCISPKPPRTHHCSVCDKCILNMD 63
+L +G+ + + +CKKC + + +CD C NMD
Sbjct: 652 FLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMD 692
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 24 YLGKGAMITEAAS-ICKKCISPKPPRTHHCSVCDKCILNMD 63
+L +G+ + + +CKKC + + +CD C NMD
Sbjct: 652 FLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMD 692
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 24 YLGKGAMITEAAS-ICKKCISPKPPRTHHCSVCDKCILNMD 63
+L +G+ + + +CKKC + + +CD C NMD
Sbjct: 652 FLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMD 692
>Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical
protein F53H10.2 protein.
Length = 900
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 32 TEAASICKKCISPKPPRTHHCSVCDKC 58
T +AS KK P HC +CDKC
Sbjct: 718 TPSASASKKGAQPSADGFFHCRLCDKC 744
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 39 KKCISPKPPRTHHCSVCDKCILNMDHHCPWLNNC 72
K CISP+ +C+ K ++ +C WL C
Sbjct: 272 KLCISPESSGPRYCASAQKFQVSTCSNCDWLGKC 305
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.325 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,761,888
Number of Sequences: 27539
Number of extensions: 343265
Number of successful extensions: 1001
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 38
length of query: 275
length of database: 12,573,161
effective HSP length: 80
effective length of query: 195
effective length of database: 10,370,041
effective search space: 2022157995
effective search space used: 2022157995
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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