Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000727-TA|BGIBMGA000727-PA|IPR001841|Zinc finger,
RING-type, IPR003111|Peptidase S16, lon N-terminal
         (371 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.7  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   4.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   4.7  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 237 IARVQVITDLIPEDSIQICDLRVTAVHICYKALSWLNSMHETVYSEIV 284
           I ++Q+   +I +  +   +L     +ICYK LS L    +T   +++
Sbjct: 296 IKKIQIFGIMITKACMSASNLIQRTPNICYKLLSNLGIFPKTTNEQLL 343


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 72  CCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCAL 105
           C   + + ++ PC +     CV+   DY+  C L
Sbjct: 295 CEGDINECLSNPCSNAGTLDCVQLVNDYHCNCKL 328


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 10  HLAHIAASSESYARQARVLLTQAIAVLI 37
           +L H+A+ S   +R+A+V  T  + V I
Sbjct: 289 NLYHLASKSNQLSREAKVTKTVLLGVKI 316


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 10  HLAHIAASSESYARQARVLLTQAIAVLI 37
           +L H+A+ S   +R+A+V  T  + V I
Sbjct: 289 NLYHLASKSNQLSREAKVTKTVLLGVKI 316


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,629
Number of Sequences: 317
Number of extensions: 3003
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 371
length of database: 114,650
effective HSP length: 58
effective length of query: 313
effective length of database: 96,264
effective search space: 30130632
effective search space used: 30130632
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)