Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000727-TA|BGIBMGA000727-PA|IPR001841|Zinc finger,
RING-type, IPR003111|Peptidase S16, lon N-terminal
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 74 4e-14
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 2e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 41 2e-04
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 40 4e-04
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 38 0.003
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 37 0.004
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.005
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.007
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.028
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 34 0.037
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 32 0.15
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.20
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.26
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.35
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 31 0.35
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 30 0.46
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.60
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.80
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.80
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 2.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 28 2.4
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 27 3.2
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 4.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 5.6
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 26 7.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 7.4
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 9.8
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 9.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 9.8
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 9.8
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 73.7 bits (173), Expect = 4e-14
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCL----RPLNDFDLSTTG 119
S ++ C +C L DPV +PCGHT+C C+ +++ + +C C P+ +
Sbjct: 164 SRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHS 223
Query: 120 GTIFIRAMLASVGALRXXX----XXXXNVMPIFICTVAYPSIPCPLFIFDPRYRLMVRRV 175
T F+R R + +P+FI +AYP +P L IF+ RY +M+++
Sbjct: 224 ITTFLRDFYPDNWLERQKSWEEEKEQESWLPLFISMLAYPRMPTFLHIFELRYHIMIKKC 283
Query: 176 LESETR-KFGMVACERNGGG----------------SEYGTILQVCDCIHMEDGRSILST 218
LE+ R M R+ G SEYGTIL++ + DGRS++
Sbjct: 284 LETSKRFCIAMPLRARSDGHNEHRELRNARGQRLFCSEYGTILEIIQVEPLIDGRSLVEA 343
Query: 219 VGVSRFRVLE 228
G R+++
Sbjct: 344 RGSYCVRIID 353
Score = 31.1 bits (67), Expect = 0.26
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 73 CSTLVD-PVTTPCGHTYCRTC 92
C+ L D PVT PCG T CR C
Sbjct: 22 CNCLPDWPVTLPCGGTVCRKC 42
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 67 INCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
+ C +C L P TT CGHTYC C+ + + C C + L
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 41.1 bits (92), Expect = 2e-04
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLN 111
C++C + T CGH YC C+E + ++ C +C LN
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLN 1134
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 54 RKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNI---KCALCLRPL 110
+K+ S + +D CV+C + + TPCGH +C C+ ++ KC +C R +
Sbjct: 191 KKQVVPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
Query: 111 N 111
+
Sbjct: 251 H 251
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMD-----YNIKCALCLRPLNDFDLS 116
+I C +C D + + C HT+CR CV ++ N+ C C PL+ DLS
Sbjct: 708 NIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLS-IDLS 762
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP 109
S + C++C P+ T C HT+C C+ + + C C P
Sbjct: 25 SSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAP 69
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 36.7 bits (81), Expect = 0.005
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 76 LVDPVTTPCGHTYCRTCVERSMDY--NIKCALC 106
+ P TT CGHTYC C+ + N+ C +C
Sbjct: 205 ITTPYTTDCGHTYCYACIMSRLKLVNNVSCPIC 237
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 36.3 bits (80), Expect = 0.007
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
C LC + P T CGH +C +C+ +C LC
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 34.3 bits (75), Expect = 0.028
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 53 VRKEAASSWLKSSDINCVLCCSTL-VDPVTTPCGHT-YCRTCVERSMDYNIKCALCLRPL 110
VRK +++S D CV+C + +PCGH + +C+ R MD ++ C +C R +
Sbjct: 7 VRKNSSNSRYLRRD--CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
Query: 111 NDFDLSTTGGTIFIRAMLASVGA 133
+ G +++ + S+G+
Sbjct: 65 DCVFYGFHGSSLYKKWYTQSLGS 87
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 33.9 bits (74), Expect = 0.037
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 28 LLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP-VTTPCGH 86
L+ A + N + + R ++ + EA + + C LC + + + PCGH
Sbjct: 705 LIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGH 764
Query: 87 TYCRTCV 93
CR C+
Sbjct: 765 FLCRECL 771
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.9 bits (69), Expect = 0.15
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
C++C P+ T CGH +C C C C
Sbjct: 254 CLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.5 bits (68), Expect = 0.20
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 66 DINCVLCCSTLVDPV-TTPCGHTYCRTCV 93
D NC +C + PV PCGH C+ C+
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECM 631
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.26
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIK-CALC 106
D C +C + PV C H +C C+ + C LC
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLC 398
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 30.7 bits (66), Expect = 0.35
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 66 DINCVLCCSTLVD-----PVTTPCGHTYCRTCVERSMDYNIKCALC 106
D+ C +C + + PCGH + + C+++ ++ + C LC
Sbjct: 104 DLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 30.7 bits (66), Expect = 0.35
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 69 CVLCCSTLV-DPVTTPCGHTYCRTCVERSMDY----NI---KCALCLRPLNDFDL 115
C +CC+ + +P+ C H C C+ + Y NI C C +P N+ D+
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDV 931
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 30.3 bits (65), Expect = 0.46
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 27 VLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGH 86
VL T AI LI++ L F+++ K+ + + + V C L+D G
Sbjct: 33 VLHTHAITDLIRDTQKEELIAAEFKSLPKDWSERLASENPADYVACIEELLDIYPMQGGR 92
Query: 87 TYCRTCVER 95
Y T VE+
Sbjct: 93 EYLETLVEK 101
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 69 CVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLN 111
C +C D + PC H + C++ + N CA+C P++
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.5 bits (63), Expect = 0.80
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 67 INCVLC-CSTLVDPVTTPCGHTYCRTCVERSMDYNIK-CALCLRPLNDFDLST 117
+ C +C S + CGH +C C+E ++ C C P + D+ T
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDILT 689
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.80
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 67 INCVLCCSTLVDP---VTTPCGHTYCRTCVER-SMDYNIKCALC 106
+ CV+C + V PC H + R C+ + +DY C C
Sbjct: 319 VECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 78 DPVTTPCGHTYCRTCVERSMD-YNIKCALCLRPLNDFDL 115
D + + CGH +C C+++ ++ +C +C R D+
Sbjct: 637 DRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDV 675
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 269 LSWLNSMHETVYSEIVSAFGNMPQMDETWWRTPDG 303
LSW + H TVYS S F + P + W +TP G
Sbjct: 391 LSWRDIQHITVYS--ASPF-DSPSQNAEWQKTPAG 422
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 14 IAASSESYARQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDI 67
+ A+S++ A R L A+L N R ++R + AV K+A S + + D+
Sbjct: 488 LKAASDALATVPRSLFAADEALLPDLNNAREISRHIVFAVLKQAVSEGMSTVDL 541
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 82 TPCGHTYCRTCVERSMDYNIKCALC 106
TPC H Y R C+ + M+ C +C
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVC 669
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 63 KSSDINCVLCCSTLVDP----VTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
+S+D NC +C + + + C H + C E + N +C C + +
Sbjct: 265 RSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTI 316
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMD-YNIK-CALC 106
C +C + PC H C C R Y K C C
Sbjct: 81 CFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFC 120
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 65 SDINCVLCCSTLVDP-----VTTPCGHTYCRTCVERSMDYNIKC 103
++I C C + LV CGH +C TC + + C
Sbjct: 143 NNIACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPC 186
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 14 IAASSESYARQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDI 67
+ A+S++ A R L A+L N R ++R + AV K+A S + + D+
Sbjct: 151 LKAASDALATVPRSLFVADEALLPDLDNAREISRHIVFAVLKQAISEGMSTVDL 204
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 79 PVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLSTTG 119
P PCGH C+ ++ C +C R + S TG
Sbjct: 323 PKRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSSPTG 363
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 62 LKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMD-YNIKCALCLRPLNDFDLSTTGG 120
+ ++DI C +C + +P G +C C++ + + KC P+ + +LS G
Sbjct: 251 VSTTDI-CKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHPFKC-----PVTNLELSRKGE 304
Query: 121 TIFIRAML 128
+ F R M+
Sbjct: 305 S-FWRLMI 311
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 9.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 210 EDGRSILSTVG--VSRFRVLETGVRDGYDIARVQVITDLIPEDSIQICDLRVTAVHICYK 267
ED T+G + R+L+T + G R+ +T L+ E I T + IC K
Sbjct: 72 EDSERFSETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLSICSK 131
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESE---TRKFGMVAC 188
V + I T+A P CP DP Y + V S+ +RK ++ C
Sbjct: 486 VPSVLIFTLALPVYQCPRLAVDPIYHMDVSNCNPSKPTWSRKLRLLQC 533
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 62 LKSSDINCVLCCSTLVD-PVT---TPCGHTYCRTCVERSMD 98
L SSD C L + PV + CGH YC +C+ R ++
Sbjct: 204 LCSSDFQLAACPFCLEEKPVAARMSRCGHVYCFSCLLRFVE 244
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.137 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,819
Number of Sequences: 5004
Number of extensions: 53877
Number of successful extensions: 172
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 37
length of query: 371
length of database: 2,362,478
effective HSP length: 74
effective length of query: 297
effective length of database: 1,992,182
effective search space: 591678054
effective search space used: 591678054
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)
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