GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000727-TA|BGIBMGA000727-PA|IPR001841|Zinc finger,
RING-type, IPR003111|Peptidase S16, lon N-terminal
         (371 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    40   8e-05
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    40   8e-05
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    25   3.4  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 40.3 bits (90), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 69  CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
           C +C  + VDP+ T C H +C  C       + +CA+C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 40.3 bits (90), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 69  CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
           C +C  + VDP+ T C H +C  C       + +CA+C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 1   MGRYRDAAPHLAHIAASSESYARQARVLLTQAI 33
           +G + D  P  AH    S+ Y RQ  ++L + +
Sbjct: 124 LGMFNDRFPRFAHQLDLSKLYIRQRAIILPEEL 156


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,284
Number of Sequences: 2123
Number of extensions: 13973
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 371
length of database: 516,269
effective HSP length: 65
effective length of query: 306
effective length of database: 378,274
effective search space: 115751844
effective search space used: 115751844
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 49 (23.8 bits)