Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000727-TA|BGIBMGA000727-PA|IPR001841|Zinc finger,
RING-type, IPR003111|Peptidase S16, lon N-terminal
(371 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 348
Query: 204 CDCI 207
D I
Sbjct: 349 DDDI 352
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 416
Query: 204 CDCI 207
D I
Sbjct: 417 DDDI 420
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 144 VMPIFICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACERNGGGSEYGTILQV 203
VMP +I + +PC L + P ++ + +L R GM E++ S +L +
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGGNRRAKGMELQEKS-SKSLLANVLDI 416
Query: 204 CDCI 207
D I
Sbjct: 417 DDDI 420
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.326 0.137 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,847
Number of Sequences: 429
Number of extensions: 3808
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 371
length of database: 140,377
effective HSP length: 59
effective length of query: 312
effective length of database: 115,066
effective search space: 35900592
effective search space used: 35900592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)
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