Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000727-TA|BGIBMGA000727-PA|IPR001841|Zinc finger,
RING-type, IPR003111|Peptidase S16, lon N-terminal
(371 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 126 2e-29
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 126 2e-29
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 126 2e-29
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 126 2e-29
At1g19740.1 68414.m02467 ATP-dependent protease La (LON) domain-... 48 8e-06
At1g75460.1 68414.m08765 ATP-dependent protease La (LON) domain-... 48 1e-05
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 46 3e-05
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 45 7e-05
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 43 3e-04
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 43 3e-04
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 42 5e-04
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 42 7e-04
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 42 9e-04
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 42 9e-04
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 42 9e-04
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 41 0.001
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 41 0.001
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 41 0.001
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At2g44410.1 68415.m05523 expressed protein 41 0.002
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 41 0.002
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 41 0.002
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 40 0.002
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 40 0.003
At5g04460.1 68418.m00443 expressed protein 40 0.004
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 39 0.005
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 39 0.006
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 39 0.006
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 39 0.006
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 38 0.008
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 38 0.011
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 38 0.011
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 38 0.011
At5g44690.1 68418.m05476 hypothetical protein 38 0.014
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 38 0.014
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 38 0.014
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 38 0.014
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 38 0.014
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 37 0.019
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 37 0.019
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 37 0.019
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 37 0.025
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 37 0.025
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 36 0.044
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 36 0.044
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 35 0.10
At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger) fa... 35 0.10
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 35 0.10
At3g19380.1 68416.m02458 U-box domain-containing protein contain... 34 0.13
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 34 0.18
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 33 0.31
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 33 0.31
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa... 33 0.31
At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family pr... 33 0.41
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 33 0.41
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa... 33 0.41
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 33 0.41
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 33 0.41
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 33 0.41
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 32 0.54
At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family pr... 32 0.54
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 32 0.71
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 32 0.71
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 32 0.71
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 32 0.71
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family pr... 31 0.94
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr... 31 0.94
At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At4g36550.1 68417.m05190 U-box domain-containing protein low sim... 31 1.2
At4g21350.1 68417.m03084 U-box domain-containing protein similar... 31 1.2
At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At1g27910.1 68414.m03420 U-box domain-containing protein contain... 31 1.2
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 31 1.2
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 31 1.6
At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing... 31 1.6
At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing... 31 1.6
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At2g29840.1 68415.m03624 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 30 2.2
At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr... 30 2.2
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At3g61460.1 68416.m06883 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 30 2.9
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 30 2.9
At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr... 30 2.9
At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At5g01880.1 68418.m00107 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 29 3.8
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family pr... 29 3.8
At1g49780.1 68414.m05582 U-box domain-containing protein similar... 29 3.8
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 29 5.0
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 29 5.0
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 29 5.0
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 29 5.0
At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger) fa... 29 5.0
At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger) fa... 29 5.0
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr... 29 5.0
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr... 29 5.0
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 29 5.0
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 29 6.6
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At2g39110.1 68415.m04805 protein kinase, putative similar to pro... 29 6.6
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 29 6.6
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 29 6.6
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 29 6.6
At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr... 28 8.7
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi... 28 8.7
At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At1g24400.1 68414.m03076 lysine and histidine specific transport... 28 8.7
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 126 bits (304), Expect = 2e-29
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%)
Query: 41 NGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN 100
N + L +V+ ++RK + +S D +C +C L +P TTPCGHT+CR+C+ +SMD
Sbjct: 169 NLQELEKVMPNSMRKTHGMAE-RSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRG 227
Query: 101 IKCALCLRPL----NDFDLSTTGGTIFIRAMLASVGALRXXXXXXXNV----MPIFICTV 152
KC LC + +S T I + + ++ MP+F+ V
Sbjct: 228 NKCPLCRTVIFMTPRTCAVSVTLNNIIEKNFPEEYAERKSEQDTLVHLGNESMPLFVMDV 287
Query: 153 AYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACE-RNGGGSEYGTILQVCDCIHMED 211
P L IF+PRYRLMVRR++E R GMVA + G + +++ +C + D
Sbjct: 288 IIPCQKLSLHIFEPRYRLMVRRIMEGNHR-MGMVALDSATGSPVDVACEVEITECDPLPD 346
Query: 212 GRSILSTVGVSRFRVLETGVRDGYDIARVQVITDLIPEDSIQICDLRVTAVHICYKALSW 271
GR +L R R+++ +DGY +A V+ + D+ P+ DLR A SW
Sbjct: 347 GRFVLELESHRRCRIVKAWDQDGYRVAEVEWVKDIPPQSEQGKADLRELTTSAASFARSW 406
Query: 272 LNSMHE 277
L+ E
Sbjct: 407 LDRAKE 412
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 126 bits (304), Expect = 2e-29
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%)
Query: 41 NGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN 100
N + L +V+ ++RK + +S D +C +C L +P TTPCGHT+CR+C+ +SMD
Sbjct: 169 NLQELEKVMPNSMRKTHGMAE-RSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRG 227
Query: 101 IKCALCLRPL----NDFDLSTTGGTIFIRAMLASVGALRXXXXXXXNV----MPIFICTV 152
KC LC + +S T I + + ++ MP+F+ V
Sbjct: 228 NKCPLCRTVIFMTPRTCAVSVTLNNIIEKNFPEEYAERKSEQDTLVHLGNESMPLFVMDV 287
Query: 153 AYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACE-RNGGGSEYGTILQVCDCIHMED 211
P L IF+PRYRLMVRR++E R GMVA + G + +++ +C + D
Sbjct: 288 IIPCQKLSLHIFEPRYRLMVRRIMEGNHR-MGMVALDSATGSPVDVACEVEITECDPLPD 346
Query: 212 GRSILSTVGVSRFRVLETGVRDGYDIARVQVITDLIPEDSIQICDLRVTAVHICYKALSW 271
GR +L R R+++ +DGY +A V+ + D+ P+ DLR A SW
Sbjct: 347 GRFVLELESHRRCRIVKAWDQDGYRVAEVEWVKDIPPQSEQGKADLRELTTSAASFARSW 406
Query: 272 LNSMHE 277
L+ E
Sbjct: 407 LDRAKE 412
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 126 bits (304), Expect = 2e-29
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%)
Query: 41 NGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN 100
N + L +V+ ++RK + +S D +C +C L +P TTPCGHT+CR+C+ +SMD
Sbjct: 169 NLQELEKVMPNSMRKTHGMAE-RSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRG 227
Query: 101 IKCALCLRPL----NDFDLSTTGGTIFIRAMLASVGALRXXXXXXXNV----MPIFICTV 152
KC LC + +S T I + + ++ MP+F+ V
Sbjct: 228 NKCPLCRTVIFMTPRTCAVSVTLNNIIEKNFPEEYAERKSEQDTLVHLGNESMPLFVMDV 287
Query: 153 AYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACE-RNGGGSEYGTILQVCDCIHMED 211
P L IF+PRYRLMVRR++E R GMVA + G + +++ +C + D
Sbjct: 288 IIPCQKLSLHIFEPRYRLMVRRIMEGNHR-MGMVALDSATGSPVDVACEVEITECDPLPD 346
Query: 212 GRSILSTVGVSRFRVLETGVRDGYDIARVQVITDLIPEDSIQICDLRVTAVHICYKALSW 271
GR +L R R+++ +DGY +A V+ + D+ P+ DLR A SW
Sbjct: 347 GRFVLELESHRRCRIVKAWDQDGYRVAEVEWVKDIPPQSEQGKADLRELTTSAASFARSW 406
Query: 272 LNSMHE 277
L+ E
Sbjct: 407 LDRAKE 412
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 126 bits (304), Expect = 2e-29
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%)
Query: 41 NGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN 100
N + L +V+ ++RK + +S D +C +C L +P TTPCGHT+CR+C+ +SMD
Sbjct: 169 NLQELEKVMPNSMRKTHGMAE-RSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRG 227
Query: 101 IKCALCLRPL----NDFDLSTTGGTIFIRAMLASVGALRXXXXXXXNV----MPIFICTV 152
KC LC + +S T I + + ++ MP+F+ V
Sbjct: 228 NKCPLCRTVIFMTPRTCAVSVTLNNIIEKNFPEEYAERKSEQDTLVHLGNESMPLFVMDV 287
Query: 153 AYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACE-RNGGGSEYGTILQVCDCIHMED 211
P L IF+PRYRLMVRR++E R GMVA + G + +++ +C + D
Sbjct: 288 IIPCQKLSLHIFEPRYRLMVRRIMEGNHR-MGMVALDSATGSPVDVACEVEITECDPLPD 346
Query: 212 GRSILSTVGVSRFRVLETGVRDGYDIARVQVITDLIPEDSIQICDLRVTAVHICYKALSW 271
GR +L R R+++ +DGY +A V+ + D+ P+ DLR A SW
Sbjct: 347 GRFVLELESHRRCRIVKAWDQDGYRVAEVEWVKDIPPQSEQGKADLRELTTSAASFARSW 406
Query: 272 LNSMHE 277
L+ E
Sbjct: 407 LDRAKE 412
>At1g19740.1 68414.m02467 ATP-dependent protease La (LON)
domain-containing protein weak similarity to SP|P36774
ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus
xanthus}; contains Pfam profile PF02190: ATP-dependent
protease La (LON) domain
Length = 278
Score = 48.4 bits (110), Expect = 8e-06
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 145 MPIF-ICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACER-NGGGSEYGTILQ 202
+P+F + V +P PL IF+ RYR+M++ +L+S+ R FG+V + +G + G + +
Sbjct: 72 LPLFPLPLVLFPGATIPLQIFEFRYRVMMQTLLQSDLR-FGVVYSDAVSGSAAGIGCVGE 130
Query: 203 VCDCIHMEDGRSILSTVGVSRFRVLETGVRDGYDIARVQVITD 245
+ + D R L G RFRV + Y +A+V + D
Sbjct: 131 IVKHERLVDDRFFLICKGQERFRVTDLVRTKPYLVAKVTWLED 173
>At1g75460.1 68414.m08765 ATP-dependent protease La (LON)
domain-containing protein weak similarity to SP|P36774
ATP-dependent protease La 2 (EC 3.4.21.53) {Myxococcus
xanthus}; contains Pfam profile PF02190: ATP-dependent
protease La (LON) domain
Length = 278
Score = 48.0 bits (109), Expect = 1e-05
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 145 MPIF-ICTVAYPSIPCPLFIFDPRYRLMVRRVLESETRKFGMVACER-NGGGSEYGTILQ 202
+P+F + V +P PL IF+ RYR+M+ +L+S+ R FG+V + +G +E G + +
Sbjct: 72 LPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQSDLR-FGVVYSDSVSGSAAEVGCVGE 130
Query: 203 VCDCIHMEDGRSILSTVGVSRFRVLETGVRDGYDIARVQVITD 245
V + D R L G RFRV Y + V + D
Sbjct: 131 VVKHERLVDDRFFLVCKGQERFRVTNVVRTKPYLVGEVTWLED 173
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 46.4 bits (105), Expect = 3e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP 109
C LC ST P TPCGH +C +C+ + +C LC P
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTP 367
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 45.2 bits (102), Expect = 7e-05
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 54 RKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDF 113
+ +A + ++ +C +C V+T CGH +C+ C++ ++ KC C + +
Sbjct: 112 KSKAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVK 171
Query: 114 DL 115
DL
Sbjct: 172 DL 173
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 45 LTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCA 104
L R+L + ++ ++WL + + CV C PCGHTYCR C C
Sbjct: 133 LMRLLAESDGCDSTTTWLGNDPLCCV-CMGREKGAAFIPCGHTYCRVCSREIWMNRGTCP 191
Query: 105 LCLRPLND 112
LC R + D
Sbjct: 192 LCNRSIFD 199
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 47 RVLFRAVRKEAASSWLKS---SDINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
R L R K A + +++ + C +C + +PVTTPC H +C+ C+E
Sbjct: 503 RKLLREAIKSANPNTMRARLLKEFKCQICQKVMTNPVTTPCAHNFCKACLE 553
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/89 (26%), Positives = 34/89 (38%)
Query: 7 AAPHLAHIAASSESYARQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSD 66
AAP S A + QA L + ++ R++ K +
Sbjct: 67 AAPGTGISGPESSGSVLVAAIRAIQADVTLTEAEKAKKRQRLMSGGGDDGVDDEEKKKLE 126
Query: 67 INCVLCCSTLVDPVTTPCGHTYCRTCVER 95
I C +C PVTTPCGH +C C E+
Sbjct: 127 IFCSICIQLPERPVTTPCGHNFCLKCFEK 155
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
+ +C +C L PVTTPC H +C+ C+E
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 42.3 bits (95), Expect = 5e-04
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
++ C LC L PV PC H +C +CV +S C +C
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVC 62
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 42.3 bits (95), Expect = 5e-04
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
++ C LC L PV PC H +C +CV +S C +C
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVC 62
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP 109
C +C VDPV T C H +C C + N KC +C +P
Sbjct: 277 CFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQP 317
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 41.9 bits (94), Expect = 7e-04
Identities = 22/89 (24%), Positives = 35/89 (39%)
Query: 7 AAPHLAHIAASSESYARQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSD 66
AAP + S A + QA L + ++ +++ K +
Sbjct: 67 AAPGTGNARPESSGSVLVAAIRAIQADETLTEAEKAKKRQKLMSGGGDDGVDEEEKKKLE 126
Query: 67 INCVLCCSTLVDPVTTPCGHTYCRTCVER 95
I C +C P+TTPCGH +C C E+
Sbjct: 127 IFCSICIQLPERPITTPCGHNFCLKCFEK 155
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
+ +C +C L PVTTPC H +C+ C+E
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKACLE 520
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 41.5 bits (93), Expect = 9e-04
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 23 RQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLK--SSDINCVLCCSTLVDPV 80
+ RV +A+ + ++ R V R+ K A +S L+ ++ C +C S V
Sbjct: 303 KNLRVCADCHLAIKLVSKVYNREIVVRDRSRSKMADTSHLERMGRELKCPICLSLYNSAV 362
Query: 81 TTPCGHTYCRTCVERSMDYNIKCALCLRP 109
+ C H +C C+ +SM + C +C P
Sbjct: 363 SLSCNHVFCNACIVKSMKMDATCPVCKIP 391
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 41.5 bits (93), Expect = 9e-04
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLND 112
D+NC LC PVT CGH +C C ++ +D N CA C + D
Sbjct: 106 DLNCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTIPD 153
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 41.5 bits (93), Expect = 9e-04
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMD-YNIKCALC 106
+++C +C +P TT CGH++C+ C+ + D KC C
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGRKCPKC 762
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP 109
C +C +DPV T C H +C C + N KC +C +P
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQP 352
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP 109
C +C +DPV T C H +C C + N KC +C +P
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQP 352
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 41.1 bits (92), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNI 101
D+ C +C T+ DP++ CGH YC C + N+
Sbjct: 228 DLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNV 263
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 40.7 bits (91), Expect = 0.002
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 57 AASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
A+ L +D C +C PCGHT+CR C C LC RP+
Sbjct: 154 ASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPI 207
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 41 NGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTC-VERSMDY 99
NG T ++ +A+ E SS + +C +C DP+ T CGH +C C + + Y
Sbjct: 98 NGENKTYLIAKALNMEKTSS-VPGGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIY 156
Query: 100 -NIK-CALCLRPLNDFDL 115
NIK C +C + D ++
Sbjct: 157 LNIKECPVCDGEVTDAEV 174
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 40.7 bits (91), Expect = 0.002
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 68 NCVLCCSTLV------DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
+CV+C +T+ D + TPC H + C++R MD ++C C RPL
Sbjct: 508 DCVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 40.7 bits (91), Expect = 0.002
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 68 NCVLCCSTLV------DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
+CV+C +T+ D + TPC H + C++R MD ++C C RPL
Sbjct: 508 DCVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/89 (25%), Positives = 33/89 (37%)
Query: 7 AAPHLAHIAASSESYARQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSD 66
AAP S + QA L + ++ R++ K +
Sbjct: 67 AAPGTGISGPESSGSVLVTAIRAIQADVTLTEAEKAKKRQRLMSGGGDDGVDDEEKKKLE 126
Query: 67 INCVLCCSTLVDPVTTPCGHTYCRTCVER 95
I C +C PVTTPCGH +C C E+
Sbjct: 127 IFCSICIQLPERPVTTPCGHNFCLKCFEK 155
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
+ +C +C L PVTTPC H +C+ C+E
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 55 KEAASSWLKSSDINCVLCCSTLVDPVT----TPCGHTYCRTCVERSMDYNIKCALCLRPL 110
K A+SS S I C C TL + ++ + CGH +C+ C E+ M + C +C +P
Sbjct: 208 KSASSSSYDKSYI-CPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDKVCLVCDKPC 266
Query: 111 NDFDL--STTGGTIF 123
D +L GGT F
Sbjct: 267 KDRNLVGLKKGGTGF 281
Score = 32.3 bits (70), Expect = 0.54
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCV 93
C LC +DP+ GH +CR C+
Sbjct: 43 CSLCLKPFIDPMCCHKGHVFCRECI 67
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 40.7 bits (91), Expect = 0.002
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
+ C +C L PVTTPC H +C+ C+E
Sbjct: 512 EFKCQICQQVLTLPVTTPCAHNFCKACLE 540
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIK-CALC 106
++ C C PVT PCGH C C E+ M + C C
Sbjct: 143 NLMCSFCMQLPERPVTKPCGHNACLKCFEKWMGQGKRTCGKC 184
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 40.7 bits (91), Expect = 0.002
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
+ C +C L PVTTPC H +C+ C+E
Sbjct: 515 EFKCQICQQVLTLPVTTPCAHNFCKACLE 543
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIK-CALC 106
++ C C PVT PCGH C C E+ M + C C
Sbjct: 143 NLMCSFCMQLPERPVTKPCGHNACLKCFEKWMGQGKRTCGKC 184
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 51 RAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
R R +A + + C +C + ++T CGH +C+ C++ ++ KC C + +
Sbjct: 130 RVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKV 189
Query: 111 NDFDL 115
+L
Sbjct: 190 TAKEL 194
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 51 RAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
R R +A + + C +C + ++T CGH +C+ C++ ++ KC C + +
Sbjct: 130 RVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKV 189
Query: 111 NDFDL 115
+L
Sbjct: 190 TAKEL 194
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 51 RAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
R R +A + + C +C + ++T CGH +C+ C++ ++ KC C + +
Sbjct: 130 RVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKV 189
Query: 111 NDFDL 115
+L
Sbjct: 190 TAKEL 194
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 53 VRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN--IKCALC 106
++ S + D+ C C LV PV CGH YC CV + + IKC C
Sbjct: 176 LKDNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQEC 231
Score = 36.3 bits (80), Expect = 0.033
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMD--YNIKCALCLRPLNDF 113
C +C L P+ CGH C CV +SM+ C +C P F
Sbjct: 26 CCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHF 72
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 53 VRKEAASSWLKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDY-NIKCALCLR 108
+R E+ K +D C +C S CGH + +TC+E+ +DY NI C LC
Sbjct: 87 LRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
Query: 109 PL 110
PL
Sbjct: 147 PL 148
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 53 VRKEAASSWLKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDY-NIKCALCLR 108
+R E+ K +D C +C S CGH + +TC+E+ +DY NI C LC
Sbjct: 87 LRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
Query: 109 PL 110
PL
Sbjct: 147 PL 148
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 51 RAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
RA +E + C +C + DPV TPC H CR C+ S + C LC
Sbjct: 1022 RAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSW-RSPSCGLC 1076
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 52 AVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCALCLRPL 110
A E S W S C +CC +D + CGH C C + KC LC P+
Sbjct: 794 AETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANELVRNGGKCPLCRAPI 853
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 39.1 bits (87), Expect = 0.005
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
+++C +C + TPCGHT+C+ C + M C +C
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQKGHCPVC 349
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 38.7 bits (86), Expect = 0.006
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMD 98
S+ +C +C ++ +PV T CGH +C C+ + +D
Sbjct: 44 SNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLD 77
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 38.7 bits (86), Expect = 0.006
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMD 98
S+ +C +C ++ +PV T CGH +C C+ + +D
Sbjct: 44 SNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLD 77
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRP-LNDFD 114
C +C + +DPV T C H +C C + N C +C P L FD
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFD 132
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIK-CALCLRPLNDFDL 115
D +C +C S + + T C H +CR C+ +++ + C LC L DL
Sbjct: 613 DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDL 663
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 55 KEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIK--CALCLRPLND 112
+E K C +C L D V TPC H CR C+ S + C +C ++
Sbjct: 780 QEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSK 839
Query: 113 FDLST 117
+L T
Sbjct: 840 QELIT 844
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 37.9 bits (84), Expect = 0.011
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 62 LKSSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
LK S C +C DPV T CGH +C CV
Sbjct: 388 LKLSSTTCSVCSDPPKDPVVTLCGHVFCYECV 419
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 37.9 bits (84), Expect = 0.011
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 63 KSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSM---DYNIKCALCLRPLND 112
+ D C +C DP+ T CGH +C C+ R + ++ +C +C + D
Sbjct: 22 QGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQD 74
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTY-CRTCVERSMDYNIKCALCLRPLND 112
S + NC +C +D + CGH C C N+KC +C+ P+ D
Sbjct: 627 SLERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPIVD 676
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 37.5 bits (83), Expect = 0.014
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVER 95
D +C +C + DPV T CGH +C C+ +
Sbjct: 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHK 47
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 37.5 bits (83), Expect = 0.014
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 47 RVLFRAVRKEAASSWLKS-SDINCVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCA 104
R L+ + + AAS +S S CV+C + D PC H C C + + KC
Sbjct: 279 RELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCP 338
Query: 105 LCLRPLND 112
+C +P+ +
Sbjct: 339 ICRQPIEE 346
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 51 RAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN--IKCALC 106
R V K S S +C +C DPV T CGH YC +C+ + + + +C +C
Sbjct: 126 RDVEKSVGSD---GSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAKECPVC 180
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 37.5 bits (83), Expect = 0.014
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
S++ C +C +P+ T CGH +C C+ + + Y+ K C
Sbjct: 14 SNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHC 56
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 37.1 bits (82), Expect = 0.019
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
+++I+C +C PCGHT+CR C C LC
Sbjct: 197 AAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 239
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 37.1 bits (82), Expect = 0.019
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDL 115
D+ C +C + D T CGH++C C+ + C C + L + L
Sbjct: 49 DLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQL 98
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 37.1 bits (82), Expect = 0.019
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 69 CVLCCSTLVDPVTTPCGHTY-CRTCVER-SMDYNIKCALCLRPL 110
CV+C S P PCGH CR C + N KC +CL+ +
Sbjct: 331 CVICVSRRRVPAFIPCGHVVCCRRCASTVERELNPKCPVCLQSI 374
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 36.7 bits (81), Expect = 0.025
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 63 KSSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
+S +C +C T DPV T CGH +C C+
Sbjct: 38 ESGCFDCNICLDTAHDPVVTLCGHLFCWPCI 68
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 36.7 bits (81), Expect = 0.025
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTC 92
D+ C +C T+ +P CGH +C +C
Sbjct: 228 DLTCAICLETVFNPYALKCGHIFCNSC 254
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 36.3 bits (80), Expect = 0.033
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 57 AASSWLKSSDINCVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCALCLRPLND 112
AAS + CV+C + D PC H C C E KC +C +P+++
Sbjct: 309 AASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHE 365
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 36.3 bits (80), Expect = 0.033
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDP---VTTPCGHTYCRTCVERSMDYNIKCALC 106
L D +C +C S+ D V+ PC H + TC+ + + N C LC
Sbjct: 285 LLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLC 332
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 35.9 bits (79), Expect = 0.044
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 43 RRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPV---TTPCGHTYCRTCVERSMDY 99
R L + +++ + + S K DI C +C VD T PC H Y +CV++ +
Sbjct: 449 RSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQWLRM 508
Query: 100 NIKCALC 106
C +C
Sbjct: 509 KNWCPIC 515
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 35.9 bits (79), Expect = 0.044
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLSTTG 119
C +C + P+ C H +C CV + C LC + DL + G
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCVSEWFERERTCPLCRALVKPADLKSFG 415
>At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 35.9 bits (79), Expect = 0.044
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 64 SSDINCVLCCSTL------VDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
S +CV+C + + D + TPC H + C++R MD ++C C R L
Sbjct: 411 SRTTDCVICMTAIDLRQHTSDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRSL 463
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 35.9 bits (79), Expect = 0.044
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
++++ C +C PCGHT+CR C C LC
Sbjct: 212 AAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 254
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 35.9 bits (79), Expect = 0.044
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
++++ C +C PCGHT+CR C C LC
Sbjct: 251 AAELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 293
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 35.9 bits (79), Expect = 0.044
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 60 SWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
S L+SS I CV C DPV T CGH +C CV
Sbjct: 671 SRLESSPICCV-CHDPPEDPVVTLCGHIFCYQCV 703
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 35.9 bits (79), Expect = 0.044
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 64 SSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
SS+ C +C DP+ T CGH +C C+
Sbjct: 18 SSNFECNICLDLAQDPIVTLCGHLFCWPCL 47
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALC 106
L D C +C D V PC H + TC+++ + N +C LC
Sbjct: 331 LSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLC 378
>At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 106
Score = 34.7 bits (76), Expect = 0.10
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 30 TQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP---VTTPCGH 86
T + I N ++++ +++ ++ S+ C++C + VT PCGH
Sbjct: 20 TITVNAKIDGYNPTPASKLVVKSLARKIYKMTTSSTGEMCIICLEEFSEGRRVVTLPCGH 79
Query: 87 TYCRTCVERSMDYNIKCALC 106
+ CV + + N C LC
Sbjct: 80 DFDDECVLKWFETNHSCPLC 99
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 34.7 bits (76), Expect = 0.10
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALC 106
L D C +C S D PCGH + +CV++ + N C LC
Sbjct: 306 LLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLC 353
>At3g19380.1 68416.m02458 U-box domain-containing protein contains
similarity to immediate-early fungal elicitor protein
CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
profile PF04564: U-box domain
Length = 421
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVER--SMDYNIKCALCLRPLNDFDL 115
C + + DPVT G TY R +E S+ N C + PL+DF L
Sbjct: 20 CPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALC 106
L D C +C S D PCGH + CV++ + N C LC
Sbjct: 318 LPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLC 365
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-----NIKCALCLR 108
C +C + P CGH YC C+ + +Y KC +C+R
Sbjct: 74 CPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVR 118
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 66 DINCVLCCSTLVDPVTT-PCGHTYCRTCVERSMDY-NIKCALC 106
D+ C +C + T C H +CR C+++SM N +C C
Sbjct: 133 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 175
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 68 NCVLCCSTLV----DPVTTPCGHTYCRTCVERSMD-YNIKCALCLRPLND 112
+C +C L D PCGHT + C+E D Y C LC + + D
Sbjct: 198 DCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCD 247
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 59 SSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN--IKCALC 106
SS + +C +C +PV T CGH YC C+ + + + +C +C
Sbjct: 129 SSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 59 SSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN--IKCALC 106
SS + +C +C +PV T CGH YC C+ + + + +C +C
Sbjct: 129 SSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 59 SSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN--IKCALC 106
SS + +C +C +PV T CGH YC C+ + + + +C +C
Sbjct: 129 SSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 59 SSWLKSSDINCVLCCSTLVDPVT-TPCGHTYCRTCVERSMDYNIKCALC 106
S K +C+LC + L + PC H +C+ C+ R D C LC
Sbjct: 98 SQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCLTRFKD----CPLC 142
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 33.1 bits (72), Expect = 0.31
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 44 RLTRVLFRAVRKEAAS---SWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
+++ R + +EA S + L+SS C C PV T CGH +C CV
Sbjct: 723 KVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFCYECV 775
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger) domain
Length = 359
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 57 AASSWLKSSDINCVLCCSTLVDPV---TTPCGHTYCRTCVERSMDYNIKCALC 106
A L + D +C +C S+ D PC H + TC+ + + C LC
Sbjct: 295 ATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLC 347
>At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 707
Score = 32.7 bits (71), Expect = 0.41
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLSTTGGTIFI 124
SD C L + DPV G T+ R +++ +D + +C + +T +
Sbjct: 242 SDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGL--MVCPKTRQALSHTTLTPNFIV 299
Query: 125 RAMLAS 130
RA LAS
Sbjct: 300 RAFLAS 305
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 VLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPV-TTPCG 85
VL + + A++ Q G R+ + R+ +A L ++C +CC L P+ G
Sbjct: 2 VLASISEALISQGDGGERVAK------RQRSAIVLLDLDILDCPICCEALTSPIFQCDNG 55
Query: 86 HTYCRTCVERSMDYNIKCALCLRPL 110
H C +C + + KC C P+
Sbjct: 56 HLACGSCCPKLSN---KCPACTLPV 77
>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
family protein low similarity to RNF6 protein [Mus
musculus] GI:20530241; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 379
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALC 106
L S D C +C D V PC H + CV++ + N C LC
Sbjct: 316 LLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLC 363
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 32.7 bits (71), Expect = 0.41
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 52 AVRKEAASSWLKSSDINCVLCCSTLVDPV-TTPCGHTYCRTCVERSMD 98
+ R+E ++ + ++C++C + PCGH +C +C+++ D
Sbjct: 283 STREETEATEKAPAQVSCIICWTEFSSSRGILPCGHRFCYSCIQKWAD 330
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 67 INCVLCCSTLVDPV-TTPCGHTYCRTCVERSMDYNIKCALCLRPLNDF 113
++C +CC L P+ GH C +C + + KC C P+ +F
Sbjct: 42 LDCPICCHALTSPIFQCDNGHIACSSCCTKLRN---KCPSCALPIGNF 86
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 66 DINCVLCCSTLVDPVTT-PCGHTYCRTCVERSMDY-NIKCALC 106
D+ C +C + T C H +CR C+++SM N +C C
Sbjct: 100 DVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTC 142
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 32.3 bits (70), Expect = 0.54
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 68 NCVLCCSTLVD----PVTTPCGHTYCRTCVERSMDYNIKCALC 106
+C +C L + V T C H YC C+ + + C LC
Sbjct: 38 SCPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLC 80
>At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 697
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 62 LKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSM-DYNIKCALCLRPLNDFDL 115
LK D+ C + + DPV GHTY R+ + + NI C + + L +L
Sbjct: 287 LKVEDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTEL 341
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTY-CRTCVERSMDYNIKCALC 106
CV+C + V PCGH C +C++ + + C +C
Sbjct: 325 CVICVDAPSEAVCVPCGHVAGCISCLKEIENKKMGCPVC 363
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTY-CRTCVERSMDYNIKCALC 106
C +C + V PCGH C +C++ N C +C
Sbjct: 387 CAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVC 425
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTY-CRTCVERSMDYNIKCALC 106
C +C + V PCGH C +C++ N C +C
Sbjct: 411 CAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVC 449
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 63 KSSDINCVLCCSTLVDPVTT----PCGHTYCRTCVERSMDYNIKCALCLRPLND 112
KS + NC +CC L PCGH C + + C +C + L D
Sbjct: 1129 KSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKSLGD 1182
>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 67 INCVLCCSTLVDPVTT----PCGHTYCRTCVERSMDYNIKCALC 106
+ C +C S VD T PC HT+ C++ + C C
Sbjct: 121 VECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPAC 164
>At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 660
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVER 95
D C + + DPV G TY RTC+E+
Sbjct: 259 DFRCPISLEMMRDPVIVSSGQTYERTCIEK 288
>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 31.5 bits (68), Expect = 0.94
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 35 VLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVE 94
++I NR RL +++ SS +D C L + DPV G TY + ++
Sbjct: 207 IVIVNRMHERLL-----LIKQTQTSSVAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIK 261
Query: 95 RSMDYNIKCALCLRPLNDFDLSTTGGTIFIRAMLAS 130
R +D +K +C + +T ++A++A+
Sbjct: 262 RWIDLGLK--VCPKTRQTLTHTTLIPNYTVKALIAN 295
>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q90972 RING finger
protein 13 {Gallus gallus}; contains Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 407
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALC 106
+ D +C +C + D PC H + CV++ + N C LC
Sbjct: 348 ISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLC 395
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 67 INCVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALC 106
+ C +C + V C H +C+ C++RS++ + KC C
Sbjct: 329 LKCGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGC 369
>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 31.5 bits (68), Expect = 0.94
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 67 INCVLCCSTLVDP----VTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLSTTGGT 121
+ C +C S LVD V C H + C++ + C LC + + +T GG+
Sbjct: 118 LECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGS 176
>At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 31.5 bits (68), Expect = 0.94
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 64 SSDINCVLCCSTLVDP---VTTPCGHTYCRTCVERSMDYNIKCALC 106
SS C +C D +T PCGH + CV + N C LC
Sbjct: 170 SSTERCTICLEEFNDGTKVMTLPCGHEFDDECVLTWFETNHDCPLC 215
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 67 INCVLCCSTLVDPVT-TPCGHTYCRTCV-ERSMDYNIK-CALC 106
++C +C + L D T + C HT+CR C+ E+ + I+ C +C
Sbjct: 14 LSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVC 56
>At4g36550.1 68417.m05190 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 577
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLNDFDL 115
C L + + DPV G+T+ R +++ D N C + R L+DF L
Sbjct: 84 CTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTL 131
>At4g21350.1 68417.m03084 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 374
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLND 112
+D C + + DPV GHT+ R +++ +D N C + PL++
Sbjct: 7 NDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSE 55
>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 420
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 67 INCVLCCSTLVDPVT-TPCGHTYCRTCV-ERSMDYNIK-CALC 106
+ C LC L D T + C HT+CR C+ E+ + I+ C +C
Sbjct: 18 MTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVC 60
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 56 EAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
+A L S+D C++C + CGH + C+ ++ C C
Sbjct: 100 DATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTC 150
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 56 EAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
+A L S+D C++C + CGH + C+ ++ C C
Sbjct: 208 DATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTC 258
>At1g27910.1 68414.m03420 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 768
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 39 NRNGRRLTRVLFRAVRKEAASSWLK--SSDINCVLCCSTLVDPVTTPCGHTYCRTCVER 95
+R +L+ FR+ SS + ++ C + + DPV G TY R C+E+
Sbjct: 253 DRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEK 311
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
S+ C LC D V T C H +C+ C+
Sbjct: 575 SEQECGLCHDPAEDYVVTSCAHVFCKACL 603
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 57 AASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTC 92
A S WL C +C + V+ PCGH CR C
Sbjct: 4654 AKSQWL------CQICQTKEVEVTIVPCGHVLCRHC 4683
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 29 LTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTY 88
L AI I+ R+ A +A S L++ D C +C + C H +
Sbjct: 297 LLSAILKRIKGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLF 356
Query: 89 CRTCVERSMDYNI----KCALCLRPL 110
C+ +D + C C +PL
Sbjct: 357 HLGCLRSWLDQGLNEVYSCPTCRKPL 382
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 29 LTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTY 88
L AI I+ R+ A +A S L++ D C +C + C H +
Sbjct: 297 LLSAILKRIKGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLF 356
Query: 89 CRTCVERSMDYNI----KCALCLRPL 110
C+ +D + C C +PL
Sbjct: 357 HLGCLRSWLDQGLNEVYSCPTCRKPL 382
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 65 SDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
S + C +C + P T CGH +C C+
Sbjct: 241 SPVQCPICLEYPLCPQITSCGHIFCFPCI 269
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 56 EAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
+A L +SD C++C + + CGH + C+ ++ C C
Sbjct: 279 DATPEELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTC 329
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 66 DINCVLCCS--TLVDPVTTPCGHTYCRTC 92
DI C +C T + + CGH YC+TC
Sbjct: 118 DIQCGICFESYTRKEIASVSCGHPYCKTC 146
>At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 282
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 30 TQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP-VTTPCGHTY 88
++ + +L+ N + +L + +++S+ K + C +C P + PC H Y
Sbjct: 189 SEMLLLLLPLLNSSAVKNILSPFAKDKSSST--KEDTVTCPICQVDPAIPFIALPCQHRY 246
Query: 89 CRTCVER--SMDYNIKCALCLRPL 110
C C+ + + +C C P+
Sbjct: 247 CYYCIRTRCASAASFRCLRCNEPV 270
>At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 333
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 30 TQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP-VTTPCGHTY 88
++ + +L+ N + +L + +++S+ K + C +C P + PC H Y
Sbjct: 240 SEMLLLLLPLLNSSAVKNILSPFAKDKSSST--KEDTVTCPICQVDPAIPFIALPCQHRY 297
Query: 89 CRTCVER--SMDYNIKCALCLRPL 110
C C+ + + +C C P+
Sbjct: 298 CYYCIRTRCASAASFRCLRCNEPV 321
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLN 111
CV+C + V PCGH C T + C LC R ++
Sbjct: 296 CVICLEQEYNAVFVPCGHMCCCTACSSHL---TSCPLCRRRID 335
>At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 327
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 69 CVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
C +C + D PC H Y + C+ + N C +C R L
Sbjct: 224 CTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 63 KSSDINCVLCCS---TLVDPVTT-PCGHTYCRTCVERSMDYNIKCALCLRPLNDFDL 115
K + NC +C T PV PCGH TC + + C +C + L D +
Sbjct: 83 KCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPICSKSLGDMQV 139
>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 226
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 67 INCVLCCSTL---VDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
++C +C + L V + PC H + R C+ + N C +C
Sbjct: 172 LDCPICLTELSSGVSRMKLPCSHVFHRDCIMTWLKKNPSCPIC 214
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 63 KSSDINCVLCCSTLVDPV---TTPCGHTYCRTCVERSMDYNIKCALC 106
K D+ C +C VD T PC H Y +C ++ + C +C
Sbjct: 462 KDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPIC 508
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 63 KSSDINCVLCCSTLVDPV---TTPCGHTYCRTCVERSMDYNIKCALC 106
K D+ C +C VD T PC H Y +C ++ + C +C
Sbjct: 462 KDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPIC 508
>At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING finger protein 38
[Homo sapiens] GI:21666412; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 62 LKSSDINCVLCCSTLVDPVTT---PCGHTYCRTCVERSMDYNIKCALCLRPLND--FDLS 116
+ D C +C + + PC H + + CV++ + N C LC + + DL+
Sbjct: 356 ISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSDLT 415
Query: 117 TTG 119
+ G
Sbjct: 416 SQG 418
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 23 RQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDIN--CVLCCSTLVDPV 80
++ R LT ++ VL+ RN ++ V A+ + + D N C +C ++P
Sbjct: 117 QRIRKRLTSSVPVLVMTRN--QIEFVYELAMETIVSEIRIDMPDHNKTCSICSGDNIEPE 174
Query: 81 ----TTPCGHTYCRTCVERSMDYNI 101
CGH +C CV++ ++ +
Sbjct: 175 QIFSVALCGHEFCMECVKQHIEVKL 199
>At2g29840.1 68415.m03624 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 31 QAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDI-----NCVLCCSTLVDP---VTT 82
Q + N RL AV ++ K+SD+ C +C D V
Sbjct: 218 QVLQASFNETNTARLKPASKLAVESLNRKTYKKASDVVGENEMCSICLEEFDDGRSIVAL 277
Query: 83 PCGHTYCRTCVERSMDYNIKCALC 106
PCGH + C + + N C LC
Sbjct: 278 PCGHEFDDECALKWFETNHDCPLC 301
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1280
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALC 106
D C +C + + + PC H C C+ R + +C C
Sbjct: 1214 DNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRCFFC 1254
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 63 KSSDINCVLCCS---TLVDPVTT-PCGHTYCRTCVERSMDYNIKCALCLRPLNDFDL 115
K + NC +C T PV PCGH TC + + C +C + L D +
Sbjct: 143 KCLEDNCPICHEYIFTSSSPVKALPCGHLMHSTCFQEYTCSHYTCPVCSKSLGDMQV 199
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 30.3 bits (65), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCV 93
C +C D V + CGH +C+ C+
Sbjct: 993 CGICNDAPEDAVASVCGHVFCKQCI 1017
>At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 612
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLNDFDLS 116
D C + + DPV G TY R ++R +D N+ C + L +F L+
Sbjct: 244 DFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLT 295
>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
family protein similar to SP:O54965 RING finger protein
13 {Mus musculus} RING zinc finger protein
Length = 234
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 66 DINCVLCCSTLV--DPVTT-PCGHTYCRTCVERSMDYNIKCALCLR 108
D C++C S V D +T PC H Y + C+ + + C +C R
Sbjct: 185 DKMCMICHSDYVRGDKLTILPCTHKYHKDCISHWLQNSKLCCVCQR 230
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 64 SSDINCVLCCSTLVDPVTTP----CGHTYCRTCVERSMDYN-IKCALCLRPLNDFDLS 116
S+ +C +C L D V CGHT C E+ ++ N +C +C + + D S
Sbjct: 154 STKNSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSPS 211
>At3g61460.1 68416.m06883 zinc finger (C3HC4-type RING finger)
family protein (BRH1) identical to BRH1 RING finger
protein [Arabidopsis thaliana] GI:4689366; identical to
cDNA BRH1 RING finger protein, GI:4689365
Length = 170
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 84 CGHTYCRTCVERSMDYNIK-CALCLRP 109
C H + R+C++R MD++ K C LC P
Sbjct: 113 CRHIFHRSCLDRWMDHDQKTCPLCRTP 139
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 69 CVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCALCLRPL 110
CV+C S D PC H C C + +C +C +P+
Sbjct: 319 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 361
>At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 58 ASSWLKSSDINCVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
A L+SSD NC +C + PC H Y C+ + + C +C + L
Sbjct: 179 AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234
>At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 58 ASSWLKSSDINCVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
A L+SSD NC +C + PC H Y C+ + + C +C + L
Sbjct: 179 AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234
>At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 58 ASSWLKSSDINCVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
A L+SSD NC +C + PC H Y C+ + + C +C + L
Sbjct: 179 AQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 66 DINCVLCCS--TLVDPVTTPCGHTYCRTC 92
DI C +C T + CGH YC+TC
Sbjct: 136 DIQCGICFESYTRKEIARVSCGHPYCKTC 164
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 23 RQARVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSD-INCVLCCS-TLVDPV 80
++ R +T + AVL+ + + R+ + +++S +K + CV+C T+ D +
Sbjct: 153 KRLREQMTFSEAVLVARNDVKFAYRLAREEIVSKSSSVNVKEAQGETCVICLEETVADRM 212
Query: 81 --TTPCGHTYCRTCVERSMDYNIKC 103
T C H YC +CV+++ +KC
Sbjct: 213 FFTDKCLHRYCFSCVKQTC---VKC 234
>At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 628
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLNDFDLS 116
D C + + DP G TY R+ ++R +D N+ C + L +F L+
Sbjct: 246 DFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLT 297
>At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 69 CVLCCSTLVDPVTTP---CGHTYCRTCVERSMDYNIK--CALCLRPLN 111
C +C T+ T C H YC TC+ R Y K C C P +
Sbjct: 43 CAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFD 90
>At5g01880.1 68418.m00107 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 28 LLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP----VTTP 83
L + A A + +R G + R L + E S +K + C +C D V P
Sbjct: 65 LSSSAAAGTVADRAGLK-KRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPP 123
Query: 84 CGHTYCRTCVERSMDYNIKCALCLRPL 110
C H++ +C++ + + C C L
Sbjct: 124 CNHSFHMSCIDTWLVSHSSCPNCRHSL 150
>At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 66 DINCVLCCSTLVDPVTT----PCGHTYCRTCVERSMDYNIKCALC 106
++ CV+C + D T PC H + CV+ + ++ C +C
Sbjct: 82 ELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPIC 126
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 83 PCGHTYCRTCVERSMDYNIKCALC-LRPLNDFDLS 116
PC H + C+++ + N+KC C D DLS
Sbjct: 252 PCAHNFHVECIDQWLRLNVKCPRCRCSVFPDLDLS 286
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 69 CVLCCSTLVDPVT-TPCGHTYCRTCV-ERSMDYNIK-CALCLRPLNDFDL 115
C +C + D T + C HT+CR+C+ + ++ + C +C L F L
Sbjct: 16 CPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPL 65
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 42 GRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGH-TYCRTCVERSM-DY 99
G ++++L R + + + D C++C V V PC H C +C + M
Sbjct: 657 GETMSKLLEELNRLDGSYEKEANYDRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGSG 716
Query: 100 NIKCALCLRPL 110
C C P+
Sbjct: 717 KATCPCCRAPV 727
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 63 KSSDINCVLCCSTLVDPVTTP----CGHTYCRTCVERSMDYNIKCALC 106
K + +CV+C S + T CGH + CV+ + + C LC
Sbjct: 134 KQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLC 181
>At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 686
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 62 LKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVER-SMDYNIKC 103
L D+ C + + DPV GHTY R+ + + NI C
Sbjct: 277 LNVDDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITC 319
>At1g49780.1 68414.m05582 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 421
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDY-NIKCALCLRPLNDFDL 115
C + + DPVT G TY RT ++ + N C + L+DF L
Sbjct: 20 CPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTL 67
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 59 SSWLKSSDINCVLCCSTLV-DPVTT-PCGHTYCRTC 92
SS+ +SS ++C +C L D +T CGH +C C
Sbjct: 113 SSFPQSSQMSCDVCMEDLPGDHMTRMDCGHCFCNNC 148
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 67 INCVLCCSTLVDPVTTPC--GHTYCRTCVERSMDYNIKCALCLRPLND 112
+ C +C +++ P+ C GHT C TC R + +C C + L D
Sbjct: 61 LECPVCTNSMYPPIHQ-CHNGHTLCSTCKAR---VHNRCPTCRQELGD 104
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLSTTGGTIFIRAML 128
C L ++DPV G T+ RT +++ +D + A+C R ++AM+
Sbjct: 244 CPLSTELMLDPVIVASGQTFDRTSIKKWLDNGL--AVCPRTRQVLTHQELIPNYTVKAMI 301
Query: 129 AS 130
AS
Sbjct: 302 AS 303
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 69 CVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCALCLRPLN 111
CV+C S D PC H C C + C +C +P++
Sbjct: 243 CVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVD 286
>At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 45 LTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDP----VTTPCGHTYCRTCVERSMDYN 100
L R F A + ++ + C +C + D V CGH++ C+++ +
Sbjct: 78 LPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSR 137
Query: 101 IKCALCLRPL 110
C C R L
Sbjct: 138 SSCPSCRRIL 147
>At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 82 TPCGHTYCRTCVERSMDYNIKCALCLRPLNDFDLST 117
T C H + TC+ R + + +C +C L D+ T
Sbjct: 146 TKCNHIFYGTCISRYLLHTPRCPVCSVELPPVDIRT 181
>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 782
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVER 95
++ C + + DPV G TY R C+E+
Sbjct: 275 ELRCPISLQLMCDPVIIASGQTYERVCIEK 304
>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 771
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 66 DINCVLCCSTLVDPVTTPCGHTYCRTCVER 95
++ C + + DPV G TY R C+E+
Sbjct: 278 ELRCPISLQLMYDPVIIASGQTYERVCIEK 307
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 62 LKSSDINCVLCCSTLVDPVTTPCGHTYCRTCV 93
L++S C +C D V + CGH +C C+
Sbjct: 912 LEASLAICGICNVAPKDAVVSLCGHVFCNQCI 943
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 56 EAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVERSMDYNI----KCALCLRPL 110
+A S L+ D C +C + C H + C+ +D + C C +PL
Sbjct: 324 DATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 382
>At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 126
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 84 CGHTYCRTCVER-SMDYNIKCALCLRPL 110
C H Y +TC++R D + C LC P+
Sbjct: 90 CVHVYHKTCIDRWIQDDKMTCPLCRTPI 117
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 68 NCVLCCSTLVDPVTTPCGHTYCRTCV 93
NC C PV TPC H C CV
Sbjct: 1047 NCKRCGEWCRLPVITPCRHLLCLDCV 1072
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 26 RVLLTQAIAVLIQNRNGRRLTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPV----T 81
R LT + VL+ + + + + E S + D C +C +P
Sbjct: 131 RQRLTSSFPVLVTRNQIKFVYELAMETIVSEI-SIHIPDHDKTCSICSDDNFEPELMFSV 189
Query: 82 TPCGHTYCRTCVERSMDYNI 101
CGH +C CV+R ++ +
Sbjct: 190 ALCGHEFCVECVKRHIEVRL 209
>At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 67 INCVLCCSTLVDP----VTTPCGHTYCRTCVERSMDYNIKCALC 106
+ CV+C S L D V C H + C++ + N C +C
Sbjct: 86 LECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPIC 129
>At2g39110.1 68415.m04805 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 435
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 177 ESETRKFGMVACERNGGGSEYGT 199
E++TRKFG R G GSE+ +
Sbjct: 30 EAKTRKFGSATMARGGSGSEFNS 52
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 45 LTRVLFRAVRKEAASSWLKSSDINCVLCCSTLVDPVTTPCGHTYCRTCVER---SMDYNI 101
L RV V+K+ + K S C V C YC +CV R SM
Sbjct: 204 LRRVRVVPVKKQPQTKGKKGSCYRCFKGSRFTEKEVCLVCDAKYCNSCVLRAMGSMPEGR 263
Query: 102 KCALCL 107
KC C+
Sbjct: 264 KCVTCI 269
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCV-----ERSMDYNIKCALCLRPLN 111
C +C P + C H +C C+ S KC LC RP++
Sbjct: 10 CSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGSTLRPCKCPLCRRPIS 57
>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 325
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 58 ASSWLKSSDINCVLCCSTLVDP---VTTPCGHTYCRTCVERSMDYNIKCALC 106
AS + +D+ C +C D VT PCGH + CV + C LC
Sbjct: 267 ASGVVCENDV-CTICLEEFDDGRSIVTLPCGHEFDEECVLEWFVRSHVCPLC 317
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 66 DINCVLCCS--TLVDPVTTPCGHTYCRTC 92
+ C +C TL + V+ CGH +C TC
Sbjct: 129 EFTCGICFDSYTLEEIVSVSCGHPFCATC 157
>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 556
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 69 CVLCCSTLVDPVTTPCGHTYCRTCVERSMDYN 100
C + S + DPV G T+ R CV+ D N
Sbjct: 39 CPISKSVMSDPVVVSSGQTFERVCVQVCRDLN 70
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 65 SDINCVLCCSTLV--DPVTT-PCGHTYCRTCVERSMDYNIKCALCLRPL 110
++ C +C LV D + PC HT+ C++ +D + C +C L
Sbjct: 226 AEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 274
>At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 69 CVLCCSTLVDPVTTP---CGHTYCRTCVER--SMDYNIKCALCLRPLN 111
C +C S + T C HTYC TC+ R S + C C P +
Sbjct: 46 CAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFD 93
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 69 CVLCCSTLVDPVTTPCGH-TYCRTCVERSMDYNIKCALCLRPL 110
CV+C S D PC H C C + C +C +P+
Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPV 327
>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 345
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 67 INCVLCCSTLVDPVTT----PCGHTYCRTCVERSMDYNIKCALC 106
+ C +C S D T PC HT+ C++ + C +C
Sbjct: 121 VECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVC 164
>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 62 LKSSDINCVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
LKSSD +C +C + PC H Y C+ + + C +C + L
Sbjct: 179 LKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKEL 230
>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 62 LKSSDINCVLCCSTLV---DPVTTPCGHTYCRTCVERSMDYNIKCALCLRPL 110
LKSSD +C +C + PC H Y C+ + + C +C + L
Sbjct: 179 LKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKEL 230
>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 340
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 68 NCVLCCSTLVDP---VTTPCGHTYCRTCVERSMDYNIKCALC 106
+CV+C D + PC H+Y C+ + N C +C
Sbjct: 287 SCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328
>At3g11110.1 68416.m01345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 158
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 80 VTTPCGHTYCRTCVERSMDYNIKCALC 106
V PC H Y CV+R + C LC
Sbjct: 122 VLPPCSHCYHCECVDRWLKTESSCPLC 148
>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
gamma) (Polynucleotide adenylyltransferase gamma) (SRP
RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
profiles PF04926: Poly(A) polymerase predicted RNA
binding domain, PF04928: Poly(A) polymerase central
domain
Length = 483
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 79 PVTTPCG-HTYCRTCVERSMDYNI 101
P+ PCG H YC + + RS Y I
Sbjct: 259 PIQLPCGSHQYCNSTITRSTFYKI 282
>At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 39 NRNGRRLTRVLFRAVRKEAASSWLKSSDIN-CVLCCS--TLVDP-VTTPCGHTYCRTCVE 94
+++ R+ R +++ ++ + ++ S D + C C T +P + T C H + +C+
Sbjct: 150 SKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIY 209
Query: 95 RSMDYNIKCALC 106
M+ + C +C
Sbjct: 210 EWMERSENCPVC 221
>At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 39 NRNGRRLTRVLFRAVRKEAASSWLKSSDIN-CVLCCS--TLVDP-VTTPCGHTYCRTCVE 94
+++ R+ R +++ ++ + ++ S D + C C T +P + T C H + +C+
Sbjct: 150 SKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIY 209
Query: 95 RSMDYNIKCALC 106
M+ + C +C
Sbjct: 210 EWMERSENCPVC 221
>At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 390
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 67 INCVLCCSTLVDP----VTTPCGHTYCRTCVERSMDYNIKCALCLRPLN-DFDLSTTGGT 121
+ C +C S D + C H + C+++ ++ + C LC +N + DLS G +
Sbjct: 122 LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNS 181
>At1g24400.1 68414.m03076 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 441
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 242 VITDLIPEDSIQICDLRVTAVHICYKALSWLNSMHETVYSEI 283
VI+ L +SI I L + + Y ++W S+H+ V+ ++
Sbjct: 166 VISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDV 207
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.326 0.137 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,662
Number of Sequences: 28952
Number of extensions: 297018
Number of successful extensions: 1203
Number of sequences better than 10.0: 178
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 210
length of query: 371
length of database: 12,070,560
effective HSP length: 82
effective length of query: 289
effective length of database: 9,696,496
effective search space: 2802287344
effective search space used: 2802287344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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