Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000726-TA|BGIBMGA000726-PA|undefined
(264 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 35 0.049
At4g39870.1 68417.m05649 expressed protein hypothetical protein,... 32 0.34
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 31 0.79
At2g34150.1 68415.m04180 expressed protein 31 1.0
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At2g47500.1 68415.m05929 kinesin motor protein-related 30 1.4
At1g75090.1 68414.m08721 methyladenine glycosylase family protei... 30 1.4
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont... 30 1.8
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 30 1.8
At5g42810.1 68418.m05214 expressed protein similar to unknown pr... 29 4.2
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 29 4.2
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 28 5.6
At1g66560.1 68414.m07562 WRKY family transcription factor 28 5.6
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 28 7.4
At2g01420.1 68415.m00062 auxin transport protein, putative simil... 28 7.4
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 27 9.8
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-... 27 9.8
At2g26110.1 68415.m03133 expressed protein 27 9.8
At2g01420.2 68415.m00063 auxin transport protein, putative simil... 27 9.8
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 223 NKVVRHARFNKVLREQDLWCIDCKLMPVLPVTGKCGHTRC 262
N++++ + +K + + DL C CK + V PV CGH C
Sbjct: 173 NELLKDNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYC 212
>At4g39870.1 68417.m05649 expressed protein hypothetical protein,
Schizosaccharomyces cerevisae, Z99168
Length = 394
Score = 32.3 bits (70), Expect = 0.34
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 85 INNFDDDEPSWDPPDMPPTHSYETPQQHVVTSTIVSGQFEIDESQAALAHHSAMDHCGFL 144
+N D S PP P E+ + + ++T + +DE +
Sbjct: 23 LNPISDKPSSAHPPPPLPDEEDESKRNQLESTTAEQPKDLVDEPDTSSFSAFLGSLLSSD 82
Query: 145 PKPE-KQPDLQDENFKMDTDDQSAHSYTLDSSSENSTPKFDGGNVTSGTGSEQ 196
PK + K D +DE + + +++ + + T D+SS ++ P TSG +++
Sbjct: 83 PKDKRKDQDPEDEEDEEEDEEEDSEAETSDTSSSSANPTRTMKETTSGGAAKK 135
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 239 DLWCIDCKLMPVLPVTGKCGHTRCTK 264
+L C C +P PVT CGH C K
Sbjct: 143 NLMCSFCMQLPERPVTKPCGHNACLK 168
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 239 DLWCIDCKLMPVLPVTGKCGHTRCTK 264
+L C C +P PVT CGH C K
Sbjct: 143 NLMCSFCMQLPERPVTKPCGHNACLK 168
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 118 IVSGQFEID-ESQAALAHHSAMDHCGFLPKPEKQPDLQDENFKMDTDDQSAHSYTLDSSS 176
++ F +D E + L HSA++ + E + D +DE + + DD YT+DS S
Sbjct: 194 VMETNFVLDAEPVSRLKEHSAVEAVQDIKPKELEMDNEDET-ESEGDDFVDALYTIDSES 252
Query: 177 EN 178
EN
Sbjct: 253 EN 254
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 238 QDLWCIDCKLMPVLPVTGKCGHTRCTK 264
+DL C C +P PVT CGH C K
Sbjct: 105 EDLNCSLCNQLPDRPVTILCGHNFCLK 131
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 30.3 bits (65), Expect = 1.4
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 14/202 (6%)
Query: 43 ALAHQSITLSLPFRLQLHSRTTQEALNLEEDSSDSNMLNSFQINNFDDDEPSWDPPDMPP 102
A + Q+ L P + H T E + + ++ + S ++ + P W PP P
Sbjct: 748 AESQQNNILKTPGGSEKHKAKTGE-VEIHNNNIMTKKSESCEVEEITVNSPPW-PPVASP 805
Query: 103 THSYETPQQHVVTSTIV------SGQFEIDESQAALAHHSAMDHCGFLPKPEKQPDLQDE 156
+Y + +S V + Q E+ ++ + + G LP+ + DL +
Sbjct: 806 GQAYREDDRSFGSSEWVDKVMVNNRQDEMRRVESLWGGATTENGIGILPEDFYRRDLASD 865
Query: 157 NFKMDTDDQSAHSYTLDSSSENSTPKFDGGNVTSGTGS--EQELSAPPICLRSVLESRRC 214
++ ++ HSY + + NST D S Q + I RS +ES+
Sbjct: 866 TSRIFSE----HSYNIFMGNNNSTDDLDAATSDSSEPDLLWQFNQSTKIPTRSNIESKLK 921
Query: 215 GQVVKQITNKVVRHARFNKVLR 236
V K I + R+ N V R
Sbjct: 922 KPVSKPIRSPQSRNNSNNTVSR 943
>At1g75090.1 68414.m08721 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 329
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 145 PKPEKQPDLQ--DENFKMDTDDQSAHSYTLDSSSENSTPKFDGGNVTS 190
P+ K P + D NF + TDD S+ S + + SS N+T + G VT+
Sbjct: 43 PRVTKSPATKKPDSNFSVSTDDSSSSSSSSERSSVNTT---NSGKVTT 87
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 236 REQDLWCIDCKLMPVLPVTGKCGHTRCTK 264
++ +++C C +P PVT CGH C K
Sbjct: 123 KKLEIFCSICIQLPERPVTTPCGHNFCLK 151
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 236 REQDLWCIDCKLMPVLPVTGKCGHTRCTK 264
++ +++C C +P PVT CGH C K
Sbjct: 123 KKLEIFCSICIQLPERPVTTPCGHNFCLK 151
>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
contains Pfam PF01876: RNase P subunit p30
Length = 581
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 107 ETPQQHVVTSTIVSGQFEIDESQAALAHHSAMDHCGFLPKPEKQPDLQDENFKMDTDDQS 166
E ++ T + + I ES HH+++D +P+PE + DE K+D ++
Sbjct: 496 ENSKERATTGHASNDEMHITES----GHHASIDDEKHIPEPEHLTSIADE-MKIDCSSEA 550
Query: 167 AHSYTLDSSSEN 178
H ++ + E+
Sbjct: 551 NHDEYMEVTMED 562
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 236 REQDLWCIDCKLMPVLPVTGKCGHTRCTK 264
++ +++C C +P P+T CGH C K
Sbjct: 123 KKLEIFCSICIQLPERPITTPCGHNFCLK 151
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 86 NNFDDDEPSWDPPDMP--PTHSYETPQQHVVTSTI 118
N+F DDE W D+P ++SY+ PQ + T+ +
Sbjct: 219 NSFTDDETVWISTDLPIDTSNSYDMPQSVMKTAAV 253
>At5g42810.1 68418.m05214 expressed protein similar to unknown
protein (pir||T26506)
Length = 451
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 53 LPFRLQLHSRTTQEALNLEED------SSDSNMLNSFQINNFDDDEPSWDPPDMPPTH 104
L L LH+ E+L + ++ + D +++ SFQ N D EPS D + PT+
Sbjct: 339 LEAELSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTN 396
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 215 GQVVKQITNKVVRHARFNKV--LREQDLWCIDCKLMPVLPVTGKCGHTRC 262
G+V + ++ R AR + L C +C P PV CGH C
Sbjct: 722 GKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFC 771
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 87 NFDDDEPSWDPPDMPPTHSYETPQQHVVTSTIVSGQFEIDESQAALAHHSAMDHCGFLPK 146
N + + ++ P PP HS TP+ + + QA H + H GF +
Sbjct: 41 NPETNVTQYERPSAPPPHSATTPKLAQIPVPSSGQGHQAQHEQAKPVGHVSQQH-GFQQQ 99
Query: 147 PEKQP 151
P++ P
Sbjct: 100 PQQFP 104
>At1g66560.1 68414.m07562 WRKY family transcription factor
Length = 249
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 65 QEALNLEEDSSDSNMLNSFQINNFD-DDEPSWDPPDMPPTHS 105
++A+ +E+++ D M IN+F DD+P W PP S
Sbjct: 196 EQAITMEDEAIDHIMNQECDINDFSVDDDPFW-ASQFPPFSS 236
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 165 QSAHSYTLDSSSENSTPKFDGGNVTSGTGSEQELSAPP 202
++ HS +D SS +S P V+SG +Q S+ P
Sbjct: 113 KTQHSCVIDLSSSSSLPYLTPSRVSSGLPGKQHTSSSP 150
>At2g01420.1 68415.m00062 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 612
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 144 LPKPEKQPDLQDENFKMDTDDQSAHSYTLDSSSENSTPKFDGGNVTSGTGSEQELSAPPI 203
+PK E Q LQ+++ K D + H + SS+ + F GG + + E A I
Sbjct: 326 IPK-ENQQQLQEKDSKASHDAKELHMFVWSSSASPVSDVFGGGAGDNVATEQSEQGAKEI 384
Query: 204 CLRSVLESRRCG 215
+ + R+ G
Sbjct: 385 RMVVSDQPRKSG 396
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 62 RTTQEALNLEEDSSDSNMLNSFQINN 87
R + ++LE+DS D+ +LNS ++N
Sbjct: 427 REKMDVIDLEDDSIDAEILNSMAVSN 452
>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 646
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 145 PKPEKQPDLQDENFKMDTDDQSAHSYTLDSS---SENSTPKFDGGNVTSGTGSE--QELS 199
PKP++ L D+ + T + SY+L SS S + + + SG + Q+
Sbjct: 342 PKPQQSAALADKRWPPTTGQVPSASYSLPSSPSPSPQPAVRVEARYLASGNEFKNFQQQQ 401
Query: 200 APPICLRSVLESRRCGQVVKQITNKV 225
P SV+ R+ QVV ITN V
Sbjct: 402 QQPANRESVMVMRQRPQVV--ITNPV 425
>At2g26110.1 68415.m03133 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 70 LEEDSSDSNMLNSFQINNFDDDEPSWDPPDMPPTHSYETPQQHVVTSTIVSGQFEIDES 128
L S + + SF + N+ EP+ PP+ + ET Q+ V + Q E ++S
Sbjct: 137 LSRSPSVLHRIKSFNLYNYISQEPTNIIEASPPSVTVETKQEQVQEQEVKEEQEEEEQS 195
>At2g01420.2 68415.m00063 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 616
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 144 LPKPEKQPDLQDENFKMDTDDQSAHSYTLDSSSENSTPKFDGGNVTSGTGSEQELSAPPI 203
+PK E Q LQ+++ K D + H + SS+ + F GG + + E A I
Sbjct: 326 IPK-ENQQQLQEKDSKASHDAKELHMFVWSSSASPVSDVFGGGAGDNVATEQSEQGAKEI 384
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,961,405
Number of Sequences: 28952
Number of extensions: 307311
Number of successful extensions: 1016
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 29
length of query: 264
length of database: 12,070,560
effective HSP length: 80
effective length of query: 184
effective length of database: 9,754,400
effective search space: 1794809600
effective search space used: 1794809600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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