Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000725-TA|BGIBMGA000725-PA|IPR001140|ABC transporter,
transmembrane region, IPR003439|ABC transporter related, IPR011527|ABC
transporter, transmembrane region, type 1, IPR003593|AAA ATPase
         (1149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   6.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 374 SLGVVGQEPVLFRGTIYDNIAI 395
           S GVVG +PV F GT  D I +
Sbjct: 31  SRGVVGPKPVPFFGTTKDLILV 52


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 536 ETKEPEEIGTVLEEQETKQNGELQPAVRPE 565
           ET++  E+  V+EEQ T+Q   L  +V PE
Sbjct: 215 ETRQSLEVQLVIEEQSTEQE-RLLLSVLPE 243


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,962
Number of Sequences: 429
Number of extensions: 10056
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 1149
length of database: 140,377
effective HSP length: 65
effective length of query: 1084
effective length of database: 112,492
effective search space: 121941328
effective search space used: 121941328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)