Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000724-TA|BGIBMGA000724-PA|IPR003439|ABC transporter
related, IPR011527|ABC transporter, transmembrane region, type 1,
IPR005829|Sugar transporter superfamily, IPR003593|AAA ATPase,
IPR001140|ABC transporter, transmembrane region
         (1258 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   6.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 1081 VLKGIDLKMEAGKTIALVGSSGCGKSTILQLFQRFYDPDSGF 1122
            + K I +K + G+T++  G  GC    ++Q  Q      S F
Sbjct: 951  IAKSISVKFQEGQTVSGGGMGGCQPGGVVQSQQPIMTDPSPF 992


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 471 SLGVVGQEPVLFRGTIYDNIAI 492
           S GVVG +PV F GT  D I +
Sbjct: 31  SRGVVGPKPVPFFGTTKDLILV 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,133
Number of Sequences: 429
Number of extensions: 12086
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 1258
length of database: 140,377
effective HSP length: 66
effective length of query: 1192
effective length of database: 112,063
effective search space: 133579096
effective search space used: 133579096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)