Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000723-TA|BGIBMGA000723-PA|IPR002109|Glutaredoxin,
IPR012336|Thioredoxin-like fold, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR011767|Glutaredoxin active site
         (313 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-4|CAA94368.1|  347|Caenorhabditis elegans Hypothetical pr...   283   1e-76
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    31   1.4  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    29   3.2  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    29   3.2  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    29   3.2  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    29   3.2  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    29   3.2  
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    28   7.5  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    28   7.5  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    28   7.5  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     28   7.5  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     28   7.5  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.5  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.5  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z70310-4|CAA94368.1|  347|Caenorhabditis elegans Hypothetical
           protein R11A8.5 protein.
          Length = 347

 Score =  283 bits (694), Expect = 1e-76
 Identities = 138/292 (47%), Positives = 189/292 (64%), Gaps = 8/292 (2%)

Query: 17  QVINDSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG-YKKV 75
           +VIN  D SNL L L+QY TCPFCCKVRA+LD  G SYEVVEV+ V R  IK+S  YKKV
Sbjct: 54  KVINHLDKSNLKLRLYQYETCPFCCKVRAFLDYHGFSYEVVEVNPVTRSQIKFSTTYKKV 113

Query: 76  PIVLAKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITN 135
           PI+ +    G   + +ST IIS L TYL      L +II+ YP     N+ GK +    N
Sbjct: 114 PILRS----GETTMTESTLIISTLATYLQRPDQSLDQIIQMYPAVDSTNEKGKPVLNYPN 169

Query: 136 KYFIMHNSPLSNDNEKSAELEERKWRQWADTVLVHTLSPNVYRTPGEALETFKWFEQAGR 195
           K+F+M      + N  SA  EER+WR+W D   +H +SPNVYR   E++ETF+WFEQ G 
Sbjct: 170 KFFVMKGKVDGDANMASAR-EEREWREWVDNWFIHLISPNVYRNWNESVETFRWFEQVGD 228

Query: 196 WKESFPGWECALMVYVGAAAMWMIAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRF 255
           W  +FP WE  L VYVGAAAM++++K LKK+HNI+D+ R+ L  A  +W  A+    ++F
Sbjct: 229 WHRTFPAWERVLAVYVGAAAMFLLSKTLKKKHNINDE-REELRKACRDWMAAIG-PNRQF 286

Query: 256 FGGDAPNLADITVYGVLSSIEGCMAFKDLRNNTQIAKWYDDVKNAIESRMGK 307
            GGD PNLAD+++YG ++S  GC AFK++    +IA+W+  +   +++  G+
Sbjct: 287 LGGDEPNLADLSLYGAMNSFYGCSAFKEVILEEKIAEWWRKMDALVKNHDGR 338


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 7   TIYLCKFRLAQVINDSDTSNLSLVLFQYRT 36
           +I L KF+LA + N   TSN  L++  Y+T
Sbjct: 167 SINLAKFQLANIFNQYSTSNKKLMILLYKT 196


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 84  GGYQQLLDSTAIIS-ILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMHN 142
           G YQ+L++S    S  LE +LL++       + F   S+ VN+  +++ +++        
Sbjct: 822 GTYQELMNSNGAFSEFLEEFLLEESKHKGRSVSFGEDSKEVNELLRDLDQVSPAIRQRIQ 881

Query: 143 SPLSNDNEKS 152
           S +S + EK+
Sbjct: 882 SQMSQEIEKT 891


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 84  GGYQQLLDSTAIIS-ILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMHN 142
           G YQ+L++S    S  LE +LL++       + F   S+ VN+  +++ +++        
Sbjct: 822 GTYQELMNSNGAFSEFLEEFLLEESKHKGRSVSFGEDSKEVNELLRDLDQVSPAIRQRIQ 881

Query: 143 SPLSNDNEKS 152
           S +S + EK+
Sbjct: 882 SQMSQEIEKT 891


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 84  GGYQQLLDSTAIIS-ILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMHN 142
           G YQ+L++S    S  LE +LL++       + F   S+ VN+  +++ +++        
Sbjct: 822 GTYQELMNSNGAFSEFLEEFLLEESKHKGRSVSFGEDSKEVNELLRDLDQVSPAIRQRIQ 881

Query: 143 SPLSNDNEKS 152
           S +S + EK+
Sbjct: 882 SQMSQEIEKT 891


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 84  GGYQQLLDSTAIIS-ILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMHN 142
           G YQ+L++S    S  LE +LL++       + F   S+ VN+  +++ +++        
Sbjct: 822 GTYQELMNSNGAFSEFLEEFLLEESKHKGRSVSFGEDSKEVNELLRDLDQVSPAIRQRIQ 881

Query: 143 SPLSNDNEKS 152
           S +S + EK+
Sbjct: 882 SQMSQEIEKT 891


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 84  GGYQQLLDSTAIIS-ILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMHN 142
           G YQ+L++S    S  LE +LL++       + F   S+ VN+  +++ +++        
Sbjct: 822 GTYQELMNSNGAFSEFLEEFLLEESKHKGRSVSFGEDSKEVNELLRDLDQVSPAIRQRIQ 881

Query: 143 SPLSNDNEKS 152
           S +S + EK+
Sbjct: 882 SQMSQEIEKT 891


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 8   IYLCKFRLAQVINDSDTSNLSLVLFQYRT 36
           I L KF+LA + N   TSN  L++  Y+T
Sbjct: 198 INLAKFQLANMFNKYSTSNKKLMILLYKT 226


>U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical
           protein C25H3.7b protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 38  PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSGYKKVPIVLAKVDGGYQQLLDSTAIIS 97
           P+C K+  +L A  I +EVV     LRQ    S    +P +  +++G  QQ+ DS  I+ 
Sbjct: 57  PYCLKIETFLRANRIKHEVVGTWLTLRQ----SPRGLLPFI--ELNG--QQISDSQVIVW 108

Query: 98  ILETYL-LDKK 107
            L+ +  LD K
Sbjct: 109 KLQKHFDLDDK 119


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 91  DSTAIISILETYLLDKKSQLT-EIIKFYP-VSQFVNDAGKNITEITNKYFIMHNSPLSND 148
           D+T  + ++     D   QLT EI+ F+    QF  DAG   T   + +F + N+ L  D
Sbjct: 291 DTTQKVLVMSFRGTDSPLQLTDEILDFFTGKKQFFPDAGNIFTYFYDAFFFLWNAGLQQD 350


>AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical
           protein C39B5.5 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 91  DSTAIISILETYLLDKKSQLT-EIIKFYP-VSQFVNDAGKNITEITNKYFIMHNSPLSND 148
           D+T  + ++     D   QLT EI+ F+    QF  DAG   T   + +F + N+ L  D
Sbjct: 235 DTTQKVLVMSFRGTDSPLQLTDEILDFFTGKKQFFPDAGNIFTYFYDAFFFLWNAGLQQD 294


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 99  LETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITE 132
           L+T+  D ++ L +I+KF P S+F++   KNI +
Sbjct: 446 LQTHF-DVRATLLDILKFQPTSKFMDRQQKNIPD 478


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 70  SGYKKVPIVLAKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVSQFVN 124
           SGY K P+V+  +DG  ++ +D   + ++   ++ D   +  ++   YP   F N
Sbjct: 170 SGYTKPPLVILSLDGFAREYVDRNIVQTL--NHIADCGVKADKVYPSYPSKTFPN 222


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 70  SGYKKVPIVLAKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVSQFVN 124
           SGY K P+V+  +DG  ++ +D   + ++   ++ D   +  ++   YP   F N
Sbjct: 175 SGYTKPPLVILSLDGFAREYVDRNIVQTL--NHIADCGVKADKVYPSYPSKTFPN 227


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 219  IAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRFFGGDAPNLADIT---VYGVLSSI 275
            +++R K  H I DD       AAN+    +  +   + GG   +LA      V GV S  
Sbjct: 3398 VSRRGKSAHLIVDDNSYESEGAANQNEDLIETQPPFYVGGVPADLAGFARNLVVGVRSQF 3457

Query: 276  EGCMAFKDLRNN 287
             GC+  KD + N
Sbjct: 3458 SGCI--KDFKLN 3467


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 219  IAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRFFGGDAPNLADIT---VYGVLSSI 275
            +++R K  H I DD       AAN+    +  +   + GG   +LA      V GV S  
Sbjct: 3430 VSRRGKSAHLIVDDNSYESEGAANQNEDLIETQPPFYVGGVPADLAGFARNLVVGVRSQF 3489

Query: 276  EGCMAFKDLRNN 287
             GC+  KD + N
Sbjct: 3490 SGCI--KDFKLN 3499


>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 119 VSQFVNDAGKNITEITNKYFIMHNSPLSNDNEKSAELEERKWRQWAD 165
           V  F  +  + + +I  +     N  +     K AE  E+ WRQW+D
Sbjct: 803 VVHFSENKAEIVKKIVEELKTRENIAVWRAERKRAEAGEKTWRQWSD 849


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 119  VSQFVNDAGKNITEITNKYFIMHNSPLSNDNEKSAELEERKWRQWAD 165
            V  F  +  + + +I  +     N  +     K AE  E+ WRQW+D
Sbjct: 2474 VVHFSENKAEIVKKIVEELKTRENIAVWRAERKRAEAGEKTWRQWSD 2520


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 219  IAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRFFGGDAPNLADIT---VYGVLSSI 275
            +++R K  H I DD       AAN+    +  +   + GG   +LA      V GV S  
Sbjct: 1244 VSRRGKSAHLIVDDNSYESEGAANQNEDLIETQPPFYVGGVPADLAGFARNLVVGVRSQF 1303

Query: 276  EGCMAFKDLRNN 287
             GC+  KD + N
Sbjct: 1304 SGCI--KDFKLN 1313


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 119  VSQFVNDAGKNITEITNKYFIMHNSPLSNDNEKSAELEERKWRQWAD 165
            V  F  +  + + +I  +     N  +     K AE  E+ WRQW+D
Sbjct: 2416 VVHFSENKAEIVKKIVEELKTRENIAVWRAERKRAEAGEKTWRQWSD 2462


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 119  VSQFVNDAGKNITEITNKYFIMHNSPLSNDNEKSAELEERKWRQWAD 165
            V  F  +  + + +I  +     N  +     K AE  E+ WRQW+D
Sbjct: 2598 VVHFSENKAEIVKKIVEELKTRENIAVWRAERKRAEAGEKTWRQWSD 2644


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 219  IAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRFFGGDAPNLADIT---VYGVLSSI 275
            +++R K  H I DD       AAN+    +  +   + GG   +LA      V GV S  
Sbjct: 3430 VSRRGKSAHLIVDDNSYESEGAANQNEDLIETQPPFYVGGVPADLAGFARNLVVGVRSQF 3489

Query: 276  EGCMAFKDLRNN 287
             GC+  KD + N
Sbjct: 3490 SGCI--KDFKLN 3499


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 219  IAKRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRFFGGDAPNLADIT---VYGVLSSI 275
            +++R K  H I DD       AAN+    +  +   + GG   +LA      V GV S  
Sbjct: 3430 VSRRGKSAHLIVDDNSYESEGAANQNEDLIETQPPFYVGGVPADLAGFARNLVVGVRSQF 3489

Query: 276  EGCMAFKDLRNN 287
             GC+  KD + N
Sbjct: 3490 SGCI--KDFKLN 3499


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
            F20B10.1 protein.
          Length = 1180

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 221  KRLKKRHNISDDVRQSLYDAANEWTIAVNKKGKRF--FGGDAPNLADITVYGVL-SSIEG 277
            KR  KRHN+SDD+   +   A++    V+  G +     G+        V+  L  + EG
Sbjct: 971  KRQSKRHNLSDDIMHDISFCASKHHFNVSVDGMQVITIEGNWTFFESFNVWHFLDENFEG 1030

Query: 278  CMA 280
            C++
Sbjct: 1031 CVS 1033


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,679,376
Number of Sequences: 27539
Number of extensions: 315881
Number of successful extensions: 786
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 25
length of query: 313
length of database: 12,573,161
effective HSP length: 81
effective length of query: 232
effective length of database: 10,342,502
effective search space: 2399460464
effective search space used: 2399460464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)