Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000723-TA|BGIBMGA000723-PA|IPR002109|Glutaredoxin,
IPR012336|Thioredoxin-like fold, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR011767|Glutaredoxin active site
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   8.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 79  LAKVDGGYQQLLDSTAIISILETYLLDKKSQLT 111
           L+KV   + QL+D+   +  +   L+D+ +QLT
Sbjct: 358 LSKVIDQHSQLIDTLENVLAIVDRLMDETNQLT 390



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 155 LEERKWRQWADTVLVHT 171
           LE  +W    DTV +HT
Sbjct: 525 LEVEEWNPLTDTVPIHT 541


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 142 NSPLSNDNEKSAELEERKWRQWADTVLVHTLS 173
           + PL ND E+SA++  R   Q ++ +L   L+
Sbjct: 27  SEPLDNDKEQSAQVCYRGAPQDSENLLGRVLA 58


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 142 NSPLSNDNEKSAELEERKWRQWADTVLVHTLS 173
           + PL ND E+SA++  R   Q ++ +L   L+
Sbjct: 27  SEPLDNDKEQSAQVCYRGAPQDSENLLGRVLA 58


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 135 NKYFIMHNSPLSNDNEKS 152
           +K+F +H  P+ ND  KS
Sbjct: 66  HKFFQVHEWPVGNDTLKS 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,594
Number of Sequences: 429
Number of extensions: 3767
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)