GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000723-TA|BGIBMGA000723-PA|IPR002109|Glutaredoxin,
IPR012336|Thioredoxin-like fold, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR011767|Glutaredoxin active site
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    28   2.0  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    28   2.0  
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    27   4.6  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   4.6  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    26   8.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   8.0  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 102 YLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMH-----NSPLSNDNEKSAELE 156
           +LLD ++  + II   PVS   N      T  T++  ++      N PL N+N  S+ + 
Sbjct: 138 HLLDHQTTDSTIIDMKPVS--TNSKSDVFTLYTDETVLLRRCASDNKPLINNNLSSSNVS 195

Query: 157 ERKWRQWADTVLVHTLSPNVYRTP 180
           E + R +     V     N+++ P
Sbjct: 196 ENQSRSFGSYDEVKNQGNNLHKVP 219


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 80  AKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVS 120
           A  DGG   +L + A+I    TY+L   S L E+   YPVS
Sbjct: 87  ALADGGPASILIAFAVIG---TYVLFTTSALAELSAIYPVS 124


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 15 LAQVINDSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAV 62
          +A+   +   SN  + +F    CPFC   +  L      Y+  E+D +
Sbjct: 4  IAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKI 51


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 263 LADITVYGVLSSIEGCMAFKDLRNNTQIAKWYD 295
           +  I V+GV+ SI    +  D   NT  A+W D
Sbjct: 84  IVSIVVFGVMLSIGEFNSLFDFNFNTHAARWVD 116


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 115 KFYPVSQFVNDAGKNITEITNKYFIMHN-SPLSNDNEKSAELEERKWRQWADTVLVHTL 172
           KFY   + V   GK++ E    YFI    + +   N  S   +ER     A+T++  TL
Sbjct: 187 KFYENGKLVEIDGKDLMETAKPYFIYPGYAFVCYPNRDSTVYQERYQIPEAETIIRGTL 245


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 135 NKYFIMHNSPLSNDNEKSAELEERKWRQWADTV-LVHTLSPNVYRTP 180
           + +FI+H     N+      +E  KW      V ++H+++P VY+ P
Sbjct: 326 SSFFIIH---CPNELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKNP 369


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,617
Number of Sequences: 5004
Number of extensions: 60350
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 6
length of query: 313
length of database: 2,362,478
effective HSP length: 73
effective length of query: 240
effective length of database: 1,997,186
effective search space: 479324640
effective search space used: 479324640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)