Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000723-TA|BGIBMGA000723-PA|IPR002109|Glutaredoxin,
IPR012336|Thioredoxin-like fold, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR011767|Glutaredoxin active site
(313 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8005| Best HMM Match : Glutaredoxin (HMM E-Value=0.00023) 67 2e-11
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 40 0.003
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_31646| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65) 30 2.1
SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 29 3.7
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54343| Best HMM Match : TipAS (HMM E-Value=0.77) 29 4.9
SB_48280| Best HMM Match : DUF1054 (HMM E-Value=2.1) 29 6.5
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 28 8.6
>SB_8005| Best HMM Match : Glutaredoxin (HMM E-Value=0.00023)
Length = 271
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 3/57 (5%)
Query: 29 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWS-GYKKVPIVLAKVDG 84
+ L+QY+TCPFCCKVRAYL+ GI Y VEV+ + R+ I++S Y+KVPI + VDG
Sbjct: 96 ITLYQYQTCPFCCKVRAYLEYFGIDYTKVEVNPLTRKEIEFSTEYRKVPIAI--VDG 150
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 14 RLAQVINDSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVD------AVLRQAI 67
++ ++I DS +N ++++F CPFC KV+A ++ + Y +E+D A+ +
Sbjct: 565 QIQRLIEDSINNN-AVMIFSKSFCPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALL 623
Query: 68 KWSGYKKVPIV 78
+ SG K VP V
Sbjct: 624 EKSGQKTVPNV 634
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 32.3 bits (70), Expect = 0.53
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 29 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKW-----SGYKKVPIVLAKVD 83
L L+ R CPF + R L A+G+ YE V V+ L+ +W KVP L +D
Sbjct: 30 LRLYSMRFCPFAERPRLVLAAKGLDYECVNVN--LKSKPEWFQTHPDCEGKVP-TLETMD 86
Query: 84 GGYQQLLDSTAIISILETY 102
G + + +S I LE Y
Sbjct: 87 G--KLIPESVIICEFLEDY 103
>SB_31646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 187 FKWFEQAGRWKE---SFPGWECALMVYVGAAAMWMIAKRLKKRHNISDDVRQSLYDAANE 243
F+W E+ K FP + + A W + + L H I R +Y A +
Sbjct: 4 FRWIEKNNASKSVDIMFPNVPEWVRTNIARVAKWRVNQYLDG-HGIGRHSRDEIYFIALK 62
Query: 244 WTIAVNK--KGKRFFGGDAPNLADITVYGVLSSI 275
AV++ K F G+ P L D +G+L+ I
Sbjct: 63 DLSAVSEILGDKAFLMGNKPTLVDTVAFGLLAVI 96
>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
Length = 861
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 141 HNSPLSNDNEKSAELEERKWRQWADTVLVHTLSPN 175
H +P+S KS +E +R+ + +VHTLSPN
Sbjct: 316 HENPMSR--MKSRHFQETAFRELSQNEMVHTLSPN 348
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 141 HNSPLSNDNEKSAELEERKWRQWADTVLVHTLSPN 175
H +P+S KS +E +R+ + +VHTLSPN
Sbjct: 618 HENPMSR--MKSRHFQETAFRELSQNEMVHTLSPN 650
>SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 213 AAAMWMIAKRLKKRHNISDDVRQSL---YDAANEWTIAVNKKGKRFFGGDAPNLAD 265
AAAM M+ K+ HNI D+++ L + NE+T+ G G N+ +
Sbjct: 74 AAAMPMLGHFQKEFHNILDEIKAGLQYAFQTNNEYTLVFTGAGHTGMEGSMMNIVE 129
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 29 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVD 60
L L+ R CP+ + R L A+G+ YE + ++
Sbjct: 19 LRLYSMRFCPYAERPRLVLAAKGVDYECININ 50
>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 138 FIMHNSPLSNDNEKSAELEERKWRQWADTVLVHTLSPNVYRTPGEALETFKWFE 191
F++ LS++ KS + E +++ D +++ L R + LET KW +
Sbjct: 54 FVIGGKTLSSEERKSLDSENKRY---GDLLILENLEDGYKRLSLKVLETIKWID 104
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 109 QLTEIIKFYP--VSQFVNDAGKNITEITNKYFIMHNSPLSNDNEKSAE 154
+L +I++ YP + FV A +++++ F+ +SP N N K+ E
Sbjct: 1989 RLLQIVELYPHTLDSFVKKALCYAFKVSSEQFVFDSSPEGNTNRKAVE 2036
>SB_54343| Best HMM Match : TipAS (HMM E-Value=0.77)
Length = 316
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 92 STAIISILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIM 140
++A ++ L+ Y+ +K ++L E++++ V+QF A +N+ I F M
Sbjct: 47 ASAKLACLQAYV-NKMNELKEVVEYSRVNQFYRSALENVMAIGTPAFAM 94
>SB_48280| Best HMM Match : DUF1054 (HMM E-Value=2.1)
Length = 406
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 95 IISILETYLLDKKSQLTEIIKFYPVSQFVNDAGKNITEITNKYFIMH-NSPLSNDN 149
I+ +L TY + + ++ E+I F P + G + ITN ++H N+ L DN
Sbjct: 20 IVFVLTTYKVVRGTKSGELIGFDPNVISKTEYGSKLPNITNSIDMLHINTNLITDN 75
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 72 YKKVPIVLAKVDGGYQQLLDSTAIISILETYLLDKKSQLTEIIKFYPVS 120
YK++P+ LAKV Y+ L + A + + L K +++ + K PV+
Sbjct: 1495 YKRLPVTLAKVGAVYKLLPVTLAKVGAVYKLLPVKLAKVGAVYKLLPVT 1543
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 208 MVYVGAAAMWMIAKRLKKRHNISDDVRQSLYDAA-NEWTIAVNKKGKRFFGGDAPNLADI 266
+VYV + I K L KR I + Y A N +A+N GK + + N+ +
Sbjct: 1166 LVYVNSKNQ--ITKELSKRTTIIRSAGKRKYKARFNISNLAINDTGKFYCTLELNNMNTL 1223
Query: 267 TVYGVLSSIE 276
T Y +LS ++
Sbjct: 1224 TEYVILSVVD 1233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,167
Number of Sequences: 59808
Number of extensions: 411476
Number of successful extensions: 883
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 41
length of query: 313
length of database: 16,821,457
effective HSP length: 82
effective length of query: 231
effective length of database: 11,917,201
effective search space: 2752873431
effective search space used: 2752873431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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