Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000722-TA|BGIBMGA000722-PA|IPR002994|Surfeit locus 1
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...   136   3e-33
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    30   0.29 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   8.2  

>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score =  136 bits (329), Expect = 3e-33
 Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 31/246 (12%)

Query: 19  ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELE--KMEYLPVKV 76
           +L  +P+ +F LG+WQV R +WK+G+I+ +  +     I +PK  +E +  K+E+  V +
Sbjct: 42  LLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVLL 101

Query: 77  KGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQ-GWLVITPFKLADTGEVILINR 135
           +G F H++E+L+GPR                   K+ Q G+ V+TPF L D G  IL+NR
Sbjct: 102 RGVFCHDQEMLVGPRT------------------KEGQPGYHVVTPFIL-DDGRRILVNR 142

Query: 136 GWIHQNLRPKEKREPS-LIKGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAH 194
           GWI ++   +  R+PS L KGPV + G++R    +  FM KN PEK S+++ ++ + +  
Sbjct: 143 GWIARSFAEQSSRDPSSLPKGPVVIEGLLRQHTDKPRFMMKNEPEKNSFYFLNVREFAQL 202

Query: 195 IGCLPIWLDAKGIPDPP--------TGWPIPNQTRVTLRNEHFSYIVTWYSLFAFTSIMW 246
            G LPI +        P         G P+ +  +V + N H  YI+TWYSL   ++IM 
Sbjct: 203 KGTLPILITELQPSLTPLQEADHVKRGLPLGHPLKVEIFNSHTEYIITWYSLSVVSAIML 262

Query: 247 HRFFIR 252
           + +F R
Sbjct: 263 YVYFKR 268


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 107 VSDP--KKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVEL 159
           V++P   K+ GW+ +  +   DT +   + R +    + PK  R   L+K PV++
Sbjct: 510 VNEPIYSKSDGWIPVMVYPFIDTKQTPFMGRAFAVPFIEPKWGRYEILVKKPVKI 564


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 185 YRDLDQMSAHIGC-LPIWLDAKGIPDPPTGWPIPNQT 220
           Y+D D  ++HIGC  P +   K I + P  +  PN T
Sbjct: 573 YQDPDDTNSHIGCDPPGYPTTKYIEEHPLAYKNPNAT 609


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/63 (23%), Positives = 25/63 (39%)

Query: 154  KGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAHIGCLPIWLDAKGIPDPPTG 213
            K PVE     +  +   P  P  N    + ++     M+A     P+++   G   PP+ 
Sbjct: 995  KAPVEKKDAEKSVQAPIPAQPTGNITIQNAYFTAPQPMAADPFQSPLYVQPTGFQPPPSA 1054

Query: 214  WPI 216
             PI
Sbjct: 1055 LPI 1057


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 213 GWPIPNQTRVTLRNEHFSYIVT---WYSLFAFTSIMWH 247
           G P+P +    +R   FSY  T   W  +FA   +  H
Sbjct: 226 GMPMPKELASRIRRPEFSYFKTHPDWSKIFAPEGVFLH 263


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,966
Number of Sequences: 5004
Number of extensions: 57227
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 2,362,478
effective HSP length: 71
effective length of query: 186
effective length of database: 2,007,194
effective search space: 373338084
effective search space used: 373338084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)