GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000722-TA|BGIBMGA000722-PA|IPR002994|Surfeit locus 1
         (257 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 144 PKEKREPSLIKGPVELTGVVRLTEKRAPFMPKNNPE 179
           P   R P  +K    ++ ++  T   AP  P+N+PE
Sbjct: 12  PTMARTP--LKSSFSISSILPETALEAPKSPENHPE 45


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 194 HIGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEH 228
           H G LP+   A   P PP    +P      L N +
Sbjct: 58  HPGLLPLAWQANSPPSPPAPSELPALKSRKLNNNN 92


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/30 (33%), Positives = 11/30 (36%)

Query: 201 WLDAKGIPDPPTGWPIPNQTRVTLRNEHFS 230
           W +   I  P    P P    V L   HFS
Sbjct: 606 WENVTNIQCPNADLPCPKDGHVILETFHFS 635


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/30 (33%), Positives = 11/30 (36%)

Query: 201 WLDAKGIPDPPTGWPIPNQTRVTLRNEHFS 230
           W +   I  P    P P    V L   HFS
Sbjct: 606 WENVTNIQCPNADLPCPKDGHVILETFHFS 635


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 156 PVELTGVVRLTEKRAPF 172
           P+E TG V + +KR P+
Sbjct: 234 PLEWTGQVTVRKKRKPY 250


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1   MRSQKVKRKEEPTEIYKWILLMIPVTSFT 29
           +R +  K +    EI  W+LL   VTS T
Sbjct: 388 LRQKNQKGEVTVLEIEDWVLLKNKVTSDT 416


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 15  IYKWILLMIPVTSFTLGSWQVYRWQ 39
           IY  + ++  VT F    W V +W+
Sbjct: 86  IYTNLSILTTVTIFKSAFWDVDKWR 110



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 119 ITPFKLA----DTGEVILINRGWIHQNLRPKEKREPSLIK 154
           +T FK A    D    +  N  +I  NL+ K K+E  L+K
Sbjct: 96  VTIFKSAFWDVDKWRTLFTNLQYIDINLQNKGKKESKLMK 135


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,404
Number of Sequences: 317
Number of extensions: 2915
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 257
length of database: 114,650
effective HSP length: 55
effective length of query: 202
effective length of database: 97,215
effective search space: 19637430
effective search space used: 19637430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)