GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000722-TA|BGIBMGA000722-PA|IPR002994|Surfeit locus 1
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    60   2e-09
06_03_1143 + 27971561-27972670,27973868-27974458                       29   2.8  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    29   4.9  
01_01_0370 + 2895685-2895717,2895892-2896944                           28   6.4  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 153 IKGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAHIGCLP---IWL-DAKGIP 208
           +K PV + GV+R +EK + F+P N P  G WFY D+  ++   G LP   I++ D     
Sbjct: 231 VKPPVRVLGVIRGSEKPSIFVPANEPSVGQWFYVDVPMIARACG-LPENTIYIEDINEDV 289

Query: 209 DPPTGWPIPNQTRVTLR-----NEHFSYIVTWYSLFAFTSIM 245
            P   +P+P      +      ++H  Y VTWY+L A  + M
Sbjct: 290 SPTNPYPVPKDVSTLIHHSVMPHDHLKYTVTWYTLSAAVTFM 331



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 27  SFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID----MPKDFS---ELEKMEYLPVKVKGE 79
           +F LGSWQ++R Q K+ ++D    +    PI      P D S   +    E+  +  +G+
Sbjct: 67  TFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPATPEFRRIVCEGD 126

Query: 80  FLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIH 139
           F  E+ + +GPR+    S +T   G  V  P      L+  P +   +   IL+NRGW+ 
Sbjct: 127 FDEERSVFVGPRSR-SISGVTEN-GYYVVTP------LIPRPSEHGSSWPPILVNRGWVP 178

Query: 140 QNLRPKEKRE 149
           ++ R K  ++
Sbjct: 179 RDWRDKNVQD 188


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 204 AKGIPDPPTGWP-IPNQTRVTLRNEHFSYIV 233
           A G+P  P GWP + N  +V L+   F Y+V
Sbjct: 30  ADGLPPGPPGWPVVGNLFQVILQRRPFMYVV 60


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 39  QWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLP 73
           Q+K G  D     +N V ID+  DF E+E++  LP
Sbjct: 438 QFKNGNADEKNLVNNPVVIDLMDDFLEMERLAALP 472


>01_01_0370 + 2895685-2895717,2895892-2896944
          Length = 361

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 72  LPVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVI 131
           L V   G+ L+++  ++G  A ++E     +   LV       G+ VI P+   +T EVI
Sbjct: 292 LVVASGGDVLYDR--VVGYAARLKEMG---KAVELVEFEGAQHGFSVIQPWS-PETSEVI 345

Query: 132 LINRGWIHQNLRPKE 146
            + + ++H+ +RP E
Sbjct: 346 QVLKRFVHKAIRPAE 360


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,110,415
Number of Sequences: 37544
Number of extensions: 354629
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 5
length of query: 257
length of database: 14,793,348
effective HSP length: 81
effective length of query: 176
effective length of database: 11,752,284
effective search space: 2068401984
effective search space used: 2068401984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)