GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000722-TA|BGIBMGA000722-PA|IPR002994|Surfeit locus 1
         (257 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homol...   203   8e-53
Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AC006651-9|AAF39867.1|  323|Caenorhabditis elegans Surfeit homolog
           protein 1 protein.
          Length = 323

 Score =  203 bits (496), Expect = 8e-53
 Identities = 101/236 (42%), Positives = 150/236 (63%), Gaps = 6/236 (2%)

Query: 19  ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFS--ELEKMEYLPVKV 76
           ++L IPV +F+LG WQ +R +WKL LI+ ++ + N    ++P+D S   LE +EY  V V
Sbjct: 87  LMLTIPVFAFSLGIWQTFRLKWKLDLIEHLKGRLNQTAQELPEDLSCESLEPLEYCRVTV 146

Query: 77  KGEFLHEKEILIGPRALIEESSITNRV-GSLVSDPK-KNQGWLVITPFKLADTGEVILIN 134
            GEFLHEKE +I PR   +    T+   GS++S+ +  + G  +ITPF+L ++G++ILIN
Sbjct: 147 TGEFLHEKEFIISPRGRFDPGKKTSAAAGSMLSENEMSSHGGHLITPFRLKNSGKIILIN 206

Query: 135 RGWIHQNLRPKEKREPSLIKGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAH 194
           RGW+       E R+ +  +G + L  +VR TEKR  F+ +N PE+G W+YRDL+QM+ H
Sbjct: 207 RGWLPSFYFDPETRQKTNPRGTLTLPAIVRKTEKRPQFVGQNVPEQGVWYYRDLNQMAKH 266

Query: 195 IGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSLFAFTSIMW-HRF 249
            G  P+ LDA      P G PI  QT + +RNEH +Y+ TW++L   T +MW H+F
Sbjct: 267 YGTEPVLLDAAYETTVP-GGPIGGQTNINVRNEHLNYLTTWFTLTLVTMLMWIHKF 321


>Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical
           protein R01E6.3b protein.
          Length = 235

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 4/40 (10%)

Query: 43  GLIDMMQ-AKSNAVPIDMPKDFSELEKMEYLPVKVKGEFL 81
           GLID ++ A  NA PI MPKDF  +E +  LP   K EF+
Sbjct: 140 GLIDTVRKATGNATPIAMPKDF-HIEHL--LPSPDKREFV 176


>Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical
           protein R01E6.3a protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 4/40 (10%)

Query: 43  GLIDMMQ-AKSNAVPIDMPKDFSELEKMEYLPVKVKGEFL 81
           GLID ++ A  NA PI MPKDF  +E +  LP   K EF+
Sbjct: 185 GLIDTVRKATGNATPIAMPKDF-HIEHL--LPSPDKREFV 221


>Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical
           protein T27A8.5 protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 71  YLPVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEV 130
           Y+P+  +  F   +E  +   +++++ ++ N V SL+ D  KN+   V   +KL    + 
Sbjct: 487 YIPI-AQQFFQRFREFAVAGFSMLDKETVRNYVESLLRDMMKNKLDRVRRVYKLTHGEDS 545

Query: 131 ILINRGWIHQNL 142
           I +   W+ + L
Sbjct: 546 IRVKTRWMKEEL 557


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 19  ILLMIPVTSFTLGSWQ------VYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYL 72
           +L+ + VT  TLG  +      VY ++W   L +  + +  +V  DMP+DF   +     
Sbjct: 12  LLIFLAVTGKTLGLREYYVNTLVYIFEWGATLNEQYEEEEGSVEEDMPEDFQHKKPRRSS 71

Query: 73  PVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVS 108
                G    EK  +I   A + E+++     + VS
Sbjct: 72  SASDLGIINREKSDIID--AKLHETNVPEAKQTTVS 105


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 164 RLTEKRAPFMPKNNPEKGSWFYRDLDQMSAHIGCLPIW 201
           RL  K AP  P+++P+K  +F   +D    H   + +W
Sbjct: 264 RLVRKIAPLEPEDDPDKFEYFIATVDCSPRHPIMIQLW 301


>Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical
           protein C36B1.3 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 166 TEKRAPFMPKNNPEKGSWF 184
           TEK APF P N P K  WF
Sbjct: 222 TEKEAPFEPDNKPNK-FWF 239


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,894,838
Number of Sequences: 27539
Number of extensions: 304060
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 12,573,161
effective HSP length: 80
effective length of query: 177
effective length of database: 10,370,041
effective search space: 1835497257
effective search space used: 1835497257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)