GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000722-TA|BGIBMGA000722-PA|IPR002994|Surfeit locus 1
         (257 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.22 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 33  WQVYRWQWKLGL 44
           WQ Y WQW LG+
Sbjct: 95  WQQYPWQWGLGI 106


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 60  PKDFSELEKMEYLPVKVKGEFLHEK 84
           P DFS   K  ++  KV+G  +HE+
Sbjct: 208 PTDFSMGVKNNHVSSKVEGNGVHEE 232


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 211 PTGWPIPNQTRVTLRNEHFSYIVTWYSLFAFTSIMWHRFFIR 252
           P    IP  T + + +      +  YS+  F S ++  FF R
Sbjct: 547 PVAINIPGDTSIIVDSSTSGATIVNYSIMIFLSAVFISFFQR 588


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,108
Number of Sequences: 429
Number of extensions: 4068
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 140,377
effective HSP length: 56
effective length of query: 201
effective length of database: 116,353
effective search space: 23386953
effective search space used: 23386953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)