GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000721-TA|BGIBMGA000721-PA|IPR011904|Acetate--CoA
ligase, IPR000873|AMP-dependent synthetase and ligase
         (714 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.70 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.70 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   8.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 494 SNRTRGFPFFGVEPKILNEDGVEIEGPGEGYLVFAR-----PWPGMMR-TLLED---QDR 544
           S   RGFP   ++ ++    G+    P  G L F +     PW G++  T+L +   Q+R
Sbjct: 44  SGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQER 103

Query: 545 FERVYFSKFPG 555
           +E  YF  FPG
Sbjct: 104 YE--YFPGFPG 112


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 494 SNRTRGFPFFGVEPKILNEDGVEIEGPGEGYLVFAR-----PWPGMMR-TLLED---QDR 544
           S   RGFP   ++ ++    G+    P  G L F +     PW G++  T+L +   Q+R
Sbjct: 44  SGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQER 103

Query: 545 FERVYFSKFPG 555
           +E  YF  FPG
Sbjct: 104 YE--YFPGFPG 112


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 1   MSSRMYKPTDHVIKKSYLPSIQ 22
           + +R   P DH++  S++PSI+
Sbjct: 460 LQTRTMHPYDHLVWNSWMPSIR 481


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 261 VLEGESNICPPEWVAAEDPLFVLYTSGSTGKPKGVVHTTAGY 302
           ++E     C    V  E P F+    G    P G  H   GY
Sbjct: 212 LIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPSGGCHCKPGY 253


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,842
Number of Sequences: 429
Number of extensions: 9562
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 714
length of database: 140,377
effective HSP length: 63
effective length of query: 651
effective length of database: 113,350
effective search space: 73790850
effective search space used: 73790850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)