Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000720-TA|BGIBMGA000720-PA|undefined
         (156 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    27   0.097
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.4  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 0.097
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 30  LHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPK 80
           L+  +  L  D   P P+P   +P P P+Q   + P+  +  P    T  K
Sbjct: 379 LNAINAALKSDEIPPEPVP---TPEPQPTQTTESEPTQASEQPTESSTTQK 426


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 54  TPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXXXSRVHPQSET 113
           +P P +   A+P+   +     P+ P+SI    +   +             S V P+  +
Sbjct: 44  SPAPPEEEAASPTPGDVPT---PSSPRSISEDPLNCRDLPNSRCNSRESSDSLVQPRCPS 100

Query: 114 TPTSLTNRAITLLAIVT 130
             + L+ RA  L  + T
Sbjct: 101 GESMLSERAALLRGVPT 117


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 40 DGSGPRPIPECFSPTPLPSQPVHAAPSARTLA 71
          DG    P+P   + +P P   +  AP    LA
Sbjct: 65 DGWQVTPLPSDGTTSPEPDPEIPVAPEPAPLA 96


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,160
Number of Sequences: 317
Number of extensions: 1521
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 156
length of database: 114,650
effective HSP length: 52
effective length of query: 104
effective length of database: 98,166
effective search space: 10209264
effective search space used: 10209264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)