Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000720-TA|BGIBMGA000720-PA|undefined
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.020
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.43 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.74 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   0.98 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   0.98 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   0.98 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   4.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   4.0  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   4.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   5.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   5.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.9  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   6.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.1 bits (72), Expect = 0.020
 Identities = 18/47 (38%), Positives = 21/47 (44%)

Query: 39  PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
           P  S   PIP    P   P+ PV + PSA +L     P  PK   PP
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 28.3 bits (60), Expect = 0.56
 Identities = 17/51 (33%), Positives = 20/51 (39%)

Query: 34  SRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGP 84
           S +  P  + PRP     SP   P  P  A P   +L P  QP  P    P
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 31  HVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSA 67
           H+    +SP  SG    P C+SP  L  QP+  +PS+
Sbjct: 391 HMRQSCISP--SGTNFSPSCYSPESLMQQPLTLSPSS 425


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 9    VSKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSAR 68
            V KS+   P+   P  A    +     + +P G+ P P P    P P PS      P   
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEI---PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108

Query: 69   TLAPRHQPTDPKSIGPP 85
               P   P    S  PP
Sbjct: 1109 VAVP---PVPAPSGAPP 1122



 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 42  SGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKS 81
           SGPRP      P PLP   + ++P++      H P+ P S
Sbjct: 959 SGPRPAAPPSIPPPLPVSNILSSPTSEP-PKDHPPSAPLS 997



 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 39   PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
            P  + P PIP    P P  S    +AP          P+ P   G P +
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085



 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 39   PDGSGPRPIPE---CFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
            P  SG  P+P+      P P PS  +   P      P   P  P S  PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP---PVPPPSEAPP 1199



 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 10  SKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQP 60
           S SA+ +P    P     G++   + +   D      +P  FSP PLP  P
Sbjct: 730 STSARALP----PPGLRFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTP 776



 Score = 24.2 bits (50), Expect = 9.1
 Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 44   PRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPK-SIGPPEIEGTEXXXXXXXXXXX 102
            P P+P    P P PS      P     AP   P  PK S+  P +               
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVP-----APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186

Query: 103  XXSRVHPQSETTP 115
                V P SE  P
Sbjct: 1187 GVPPVPPPSEAPP 1199


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 48  PECFSPTPLPSQPVHAAPSARTLAPR--------HQPTDPKSIGPPEIEGTEXXXXXXXX 99
           P  FS +   S  V   PS+ +L+          H+P    ++GP  I            
Sbjct: 461 PNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVGPVRISSNRRSRKFSSS 520

Query: 100 XXXXXSRVHPQSETTPTSLTNRAITLLAIVTAIYTVAQL 138
                S +   S  +P+S T  A +  +  T  +++  L
Sbjct: 521 SRVSVSNLLAGSPPSPSSSTKSASSSYSTTTPAFSIGPL 559


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 44  PRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXX 103
           P  +P+  SP P  S    +  +A T +P     +PK +   + E  +            
Sbjct: 274 PVSVPDMSSPVPASSVEYESLKAAVTYSPSQ---NPKKVAETDSESRKSSFQSSYNDADR 330

Query: 104 XSRVHPQSETTPTSLT 119
             +V  Q+++TP  ++
Sbjct: 331 PFQVGAQTQSTPNRIS 346


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 39  PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
           P  S P P P  F+P  +P  P+  AP    L     P  P  +  P
Sbjct: 487 PGTSAPLP-PTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALP 532


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 42  SGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSI---GPP 85
           S P P P    PTP P+ P+   P A  +     P  P  +   GPP
Sbjct: 731 SPPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 11  KSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRP-IPECFSPTPLPSQPVHAAPSART 69
           KS ++  +Q+LPR     R  +Y    + DG    P I    S    PS+P H   +++ 
Sbjct: 125 KSGRMARSQELPRITSSNR-EIYLNGQTSDGGYAAPAISRAESTAIQPSEP-HDVDTSKN 182

Query: 70  LAPRHQPTDPKSIGPPEIEGTE 91
              + Q ++ +    PE++G +
Sbjct: 183 GLSKKQHSEAQ----PEVQGND 200


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 53  PTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPE 86
           PTPLPS  +++  +   L   H  TD   + PPE
Sbjct: 378 PTPLPSVHMNSHIAKGELPKFHNSTDNPFLTPPE 411


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 40  DGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQ-PTDPKSIGPPEIEGT 90
           +GS   PIP    P    +    A P++ T + R Q P+ PK +G P    T
Sbjct: 332 EGSPSLPIP--ILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPSTAET 381


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 38  SPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGP 84
           +P+ S P  +     P+   S     AP+  T  P     +  S+GP
Sbjct: 597 TPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGP 643


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 51 FSPTPLPSQPVHAAPSARTLAPRHQPTDPKS 81
          F  TP PS     APS+   A R +P  P S
Sbjct: 46 FVLTPEPSSNTFYAPSSPASAVRREPLSPMS 76


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 51  FSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXXXSRVHPQ 110
           FSP  L S    A+ +    +P  +P     + PP +  T              S+  P 
Sbjct: 195 FSPKALSSPTQGASSNVTPESPPEKPIPSFVLSPPPVSATNEANKLSDIQTSSPSQDIPA 254

Query: 111 SETTPTSLTNRAIT 124
               P  L NR+++
Sbjct: 255 KHLEPLHL-NRSLS 267


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 33  YSRVLSPDGSGPRPIPECFSPTPLPSQPVHAA--PSARTLAPRHQPTDPKSIGPP 85
           Y+    P G G  P+P   S   L    +H +  PS R+  PR  P+ P  +  P
Sbjct: 316 YNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPS-PSHLSIP 369


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 47  IPECFSPTPLP--SQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
           IPE    TP P  S P+ ++P A      +  + P  +  PE+
Sbjct: 195 IPETVPSTPQPASSLPIPSSPPAALETEENVDSQPMELDEPEL 237


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 52  SPTPLPSQPVHAAPSARTLAPRHQP 76
           SP+P  S+   + P    L PRH+P
Sbjct: 599 SPSPWRSELFLSDPDQNVLTPRHKP 623


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,750
Number of Sequences: 5004
Number of extensions: 25311
Number of successful extensions: 78
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 24
length of query: 156
length of database: 2,362,478
effective HSP length: 67
effective length of query: 89
effective length of database: 2,027,210
effective search space: 180421690
effective search space used: 180421690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)