Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000720-TA|BGIBMGA000720-PA|undefined
(156 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.020
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 0.43
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.74
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 0.98
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 0.98
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 0.98
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.7
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 1.7
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 4.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 4.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 4.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 5.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.9
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 6.9
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.020
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 39 PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
P S PIP P P+ PV + PSA +L P PK PP
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.3 bits (60), Expect = 0.56
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 34 SRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGP 84
S + P + PRP SP P P A P +L P QP P P
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 28.7 bits (61), Expect = 0.43
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 31 HVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSA 67
H+ +SP SG P C+SP L QP+ +PS+
Sbjct: 391 HMRQSCISP--SGTNFSPSCYSPESLMQQPLTLSPSS 425
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.74
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 9 VSKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSAR 68
V KS+ P+ P A + + +P G+ P P P P P PS P
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEI---PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108
Query: 69 TLAPRHQPTDPKSIGPP 85
P P S PP
Sbjct: 1109 VAVP---PVPAPSGAPP 1122
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 42 SGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKS 81
SGPRP P PLP + ++P++ H P+ P S
Sbjct: 959 SGPRPAAPPSIPPPLPVSNILSSPTSEP-PKDHPPSAPLS 997
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 39 PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
P + P PIP P P S +AP P+ P G P +
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 39 PDGSGPRPIPE---CFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
P SG P+P+ P P PS + P P P P S PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP---PVPPPSEAPP 1199
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 10 SKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQP 60
S SA+ +P P G++ + + D +P FSP PLP P
Sbjct: 730 STSARALP----PPGLRFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTP 776
Score = 24.2 bits (50), Expect = 9.1
Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 44 PRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPK-SIGPPEIEGTEXXXXXXXXXXX 102
P P+P P P PS P AP P PK S+ P +
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVP-----APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186
Query: 103 XXSRVHPQSETTP 115
V P SE P
Sbjct: 1187 GVPPVPPPSEAPP 1199
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 0.98
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 48 PECFSPTPLPSQPVHAAPSARTLAPR--------HQPTDPKSIGPPEIEGTEXXXXXXXX 99
P FS + S V PS+ +L+ H+P ++GP I
Sbjct: 461 PNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVGPVRISSNRRSRKFSSS 520
Query: 100 XXXXXSRVHPQSETTPTSLTNRAITLLAIVTAIYTVAQL 138
S + S +P+S T A + + T +++ L
Sbjct: 521 SRVSVSNLLAGSPPSPSSSTKSASSSYSTTTPAFSIGPL 559
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 0.98
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 44 PRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXX 103
P +P+ SP P S + +A T +P +PK + + E +
Sbjct: 274 PVSVPDMSSPVPASSVEYESLKAAVTYSPSQ---NPKKVAETDSESRKSSFQSSYNDADR 330
Query: 104 XSRVHPQSETTPTSLT 119
+V Q+++TP ++
Sbjct: 331 PFQVGAQTQSTPNRIS 346
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 0.98
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 39 PDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
P S P P P F+P +P P+ AP L P P + P
Sbjct: 487 PGTSAPLP-PTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALP 532
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 42 SGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSI---GPP 85
S P P P PTP P+ P+ P A + P P + GPP
Sbjct: 731 SPPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 1.7
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 11 KSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRP-IPECFSPTPLPSQPVHAAPSART 69
KS ++ +Q+LPR R +Y + DG P I S PS+P H +++
Sbjct: 125 KSGRMARSQELPRITSSNR-EIYLNGQTSDGGYAAPAISRAESTAIQPSEP-HDVDTSKN 182
Query: 70 LAPRHQPTDPKSIGPPEIEGTE 91
+ Q ++ + PE++G +
Sbjct: 183 GLSKKQHSEAQ----PEVQGND 200
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 PTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPE 86
PTPLPS +++ + L H TD + PPE
Sbjct: 378 PTPLPSVHMNSHIAKGELPKFHNSTDNPFLTPPE 411
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 4.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 40 DGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQ-PTDPKSIGPPEIEGT 90
+GS PIP P + A P++ T + R Q P+ PK +G P T
Sbjct: 332 EGSPSLPIP--ILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPSTAET 381
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 38 SPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGP 84
+P+ S P + P+ S AP+ T P + S+GP
Sbjct: 597 TPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGP 643
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 51 FSPTPLPSQPVHAAPSARTLAPRHQPTDPKS 81
F TP PS APS+ A R +P P S
Sbjct: 46 FVLTPEPSSNTFYAPSSPASAVRREPLSPMS 76
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 51 FSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXXXSRVHPQ 110
FSP L S A+ + +P +P + PP + T S+ P
Sbjct: 195 FSPKALSSPTQGASSNVTPESPPEKPIPSFVLSPPPVSATNEANKLSDIQTSSPSQDIPA 254
Query: 111 SETTPTSLTNRAIT 124
P L NR+++
Sbjct: 255 KHLEPLHL-NRSLS 267
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 33 YSRVLSPDGSGPRPIPECFSPTPLPSQPVHAA--PSARTLAPRHQPTDPKSIGPP 85
Y+ P G G P+P S L +H + PS R+ PR P+ P + P
Sbjct: 316 YNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPS-PSHLSIP 369
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 47 IPECFSPTPLP--SQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
IPE TP P S P+ ++P A + + P + PE+
Sbjct: 195 IPETVPSTPQPASSLPIPSSPPAALETEENVDSQPMELDEPEL 237
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 52 SPTPLPSQPVHAAPSARTLAPRHQP 76
SP+P S+ + P L PRH+P
Sbjct: 599 SPSPWRSELFLSDPDQNVLTPRHKP 623
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,750
Number of Sequences: 5004
Number of extensions: 25311
Number of successful extensions: 78
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 24
length of query: 156
length of database: 2,362,478
effective HSP length: 67
effective length of query: 89
effective length of database: 2,027,210
effective search space: 180421690
effective search space used: 180421690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -