Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000720-TA|BGIBMGA000720-PA|undefined
(156 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 34 0.047
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 34 0.062
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 33 0.081
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.081
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 33 0.14
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 30 0.76
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3) 30 0.76
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_2309| Best HMM Match : Fasciclin (HMM E-Value=0) 29 1.3
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 29 1.8
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 29 1.8
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 29 1.8
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 28 3.1
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 28 3.1
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 27 5.3
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 5.3
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 27 5.3
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 5.3
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 27 7.1
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 27 9.3
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 27 9.3
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0) 27 9.3
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 35.9 bits (79), Expect = 0.015
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 9 VSKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSG-PR--PIPECFSPTPLPSQPV-HAA 64
+S+ L + LP R EG L+ YS+VL G PR PIP C QPV H
Sbjct: 1213 LSRGRPLQTSSTLPERMEGNHLYKYSKVLDRASLGAPRTQPIPACPHLVWATPQPVNHTL 1272
Query: 65 PS 66
PS
Sbjct: 1273 PS 1274
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 34.3 bits (75), Expect = 0.047
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 38 SPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
+P RP+ +P PLP +PV A PS PR +P PKS PP
Sbjct: 842 APTTKTDRPLSPS-APPPLPPRPVGAPPSLPP-RPRTRPLPPKSDTPP 887
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 33.9 bits (74), Expect = 0.062
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 38 SPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGP 84
SP +G P+ + P P P+Q H +T PR QP P GP
Sbjct: 286 SPTPAGSAPVVK---PAPKPAQQTHIGQMVQTPPPRPQPQRPPRAGP 329
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 33.5 bits (73), Expect = 0.081
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 39 PDGSGPRPIPECFS-PTPLPSQPVHAAPSART--LAPRHQPT 77
P GPRP+P PTP P+ P A PS T LAPR +PT
Sbjct: 36 PIPHGPRPLPPLREPPTPAPTPP-PALPSTPTLPLAPRPRPT 76
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 33.5 bits (73), Expect = 0.081
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 32 VYSRVLSPDGSGPRPIPECFSPTPLPSQ-----PVHAAPSARTLAPRHQPTDPKSIGPPE 86
V+ + +P P+P P C+ PTP P+ P AP+A T + T P + PP
Sbjct: 873 VWPNLTAPCNGNPQPNPGCYFPTPAPTTTPWVWPNATAPTATTPSGGGNETAPTAT-PPS 931
Query: 87 IEGTE 91
G E
Sbjct: 932 GGGNE 936
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 38 SPDGSGPRPIPECFSPTPLPSQP-VHAAPSARTLAPRHQPTDPKSIGP 84
+P + P P+P +P P P+ P AAP+ P P+ +S P
Sbjct: 98 APAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSPSSVRSATP 145
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 31.9 bits (69), Expect = 0.25
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 53 PTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXXXXXSRVHPQSE 112
PT P+ P P T P PTDP + PP + TE S V P S
Sbjct: 27 PTDPPTDPPTDPP---TDPPTDPPTDPPT-DPPTLLATEAQSALATEAIAPTSTVEPTST 82
Query: 113 TTPTS 117
PT+
Sbjct: 83 VEPTN 87
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 30.3 bits (65), Expect = 0.76
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 52 SPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
+PT +P V AP+ T+ P QPT+P S PP I
Sbjct: 110 APTTVPPPVVTDAPT--TVPPPVQPTEPPSTRPPPI 143
>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
Length = 491
Score = 30.3 bits (65), Expect = 0.76
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 39 PDGS--GPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDP 79
PDG PRP+P+ L +PV P + L+PR P P
Sbjct: 424 PDGQRPSPRPVPDPPDGQHLSPRPVPDPPDGQHLSPRPVPDPP 466
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.9 bits (64), Expect = 1.0
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 38 SPDGSGPRPIP--ECFSPTPLPSQPVHAAPSARTLAPRHQPTD-PKSIGPPEIEGT-EXX 93
+P S IP E +PT PS P A S TL PTD P S G P ++ T
Sbjct: 683 NPTDSSASKIPQVEKANPTNKPSVPTDA--STPTLGKTESPTDNPASTGNPALKTTPHTT 740
Query: 94 XXXXXXXXXXXSRVHPQSETTPTSLT 119
+ P + T PT T
Sbjct: 741 TRPSEATAKPQATAIPPATTKPTGST 766
>SB_2309| Best HMM Match : Fasciclin (HMM E-Value=0)
Length = 503
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 12 SAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGP 44
+AQ P ++ A G LH SRV+ P G GP
Sbjct: 334 TAQCSPITKVNLNASNGVLHELSRVMLPPGHGP 366
>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
Length = 667
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 14 QLVPAQQLPRR-AEGGRLHVYSRVLSPDGSGPRPIPECFSPTP 55
QLVP RR A G Y ++ SPD + P+ P P P
Sbjct: 532 QLVPPTSGMRRIASAGTYAPYQQLTSPDTAAPKTSPPTLPPIP 574
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 34 SRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSART---LAPRHQPTDPKSIGPPEI 87
SRV + P+P P P PS P P +T LAP T PK+ P I
Sbjct: 617 SRVPPQPETAPKPFPNITPPEVRPSLP-GTPPETKTKPPLAPYPPKTSPKTTPKPHI 672
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 38 SPDGSGPRPIPECFSPTPLP-SQPVHAAPSARTLAPRHQPTDPKSIG--PP 85
+P S P P+P + P P QP + P ++ +AP P P S+G PP
Sbjct: 932 TPSWSQPVPVPSMYQPQPPGIMQPPTSIPPSQPMAPPSFP--PSSMGGFPP 980
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 37 LSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
+ P + P PIP P P P+ RT P P DP PP I
Sbjct: 174 IDPPRTQPPPIPPIDPPRTQPP-PIPPIDPPRTQPPPIPPIDPPRTQPPPI 223
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 45 RPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEI 87
+P+ +P P+ P+ RT P P DP PP I
Sbjct: 142 KPVMTPTTPAPMTLPPISPIDPPRTQPPPIFPIDPPRTQPPPI 184
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 30 LHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQP 76
+ +Y V PD S + I E SP P P +P + AP ++P
Sbjct: 322 VRIYKHVQLPDPSSSKDIEEPVSPAP-PKKPRRSPSKPAIPAPAYKP 367
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 34 SRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAP 72
S++ G+ P + P PLP QPV PSA+ P
Sbjct: 415 SKIKVGQGAAPPHTAQHQQPQPLPMQPVQQQPSAQQPQP 453
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/77 (25%), Positives = 28/77 (36%)
Query: 42 SGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPPEIEGTEXXXXXXXXXX 101
SGP+PIPE + T S P + + R L P G P + T
Sbjct: 1583 SGPKPIPEDLAVTYALSAPTTSQNATRILRALQLPRPILLEGSPGVGKTSLVSAIAKASG 1642
Query: 102 XXXSRVHPQSETTPTSL 118
R++ +T T L
Sbjct: 1643 HELVRINLSEQTDITDL 1659
>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1157
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 44 PRPIPECFSPTPLPSQPVHAAPSARTLAP 72
P P P F PTP PS+ P T AP
Sbjct: 285 PSPPPSTFPPTPTPSRSNWTIPELDTPAP 313
>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 41 GSGPRPIPECFSPTPLPSQPVHAAPSART 69
G P P +PTP P+ P HA P+ T
Sbjct: 475 GLDPVPSAPTQAPTPTPAAPTHAPPAPMT 503
>SB_46610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 RAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPR--HQPTDPKS 81
+ +G V+ R L + SGP+P+P+ + P+ +QP A + PT+P S
Sbjct: 190 KGKGKVSSVFDR-LGEEPSGPKPVPKMAAAAPIRAQPPLKPLKTSITAQKKVKTPTEPSS 248
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 52 SPTPLPSQP-VHAAPSARTLAPRHQPTDPKSIGPPEIEGTE 91
SPTP+P QP +A S L+ P +P SI P TE
Sbjct: 727 SPTPVPVQPSTSSAASRPNLSASSAPLEPLSITIPPSNITE 767
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 40 DGSGPR-PIPECFSPTPLPSQPVHAAPSAR----------TLAPRHQPTDPKSIG 83
D GP P PE +PTP PS P H +PS + +L P H D + G
Sbjct: 59 DSPGPMSPEPEIMTPTPEPS-PKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEEEG 112
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 18 AQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPT 77
AQQ P + + + R++SP P + P+ P + P A TL+PR Q
Sbjct: 2136 AQQPPGQHYQAK-QMQPRLMSPQAPPPMSPQQGGLPSQSPRPVMSPQPHANTLSPRQQTM 2194
Query: 78 DP 79
P
Sbjct: 2195 SP 2196
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 42 SGPRPIPECFSP---TPLPSQPVHAAPSARTLAPRHQPTD-PKSIGPPEIEGT 90
S P P SP TP+ P P + P P D PKS+ PP + T
Sbjct: 517 SSPPTSPTQQSPLETTPVLPLPEKVTPEPGSTTPPSPPPDSPKSVAPPALRST 569
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 37 LSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSIGPP 85
L P + P P F+P P P P+ P + L P P PP
Sbjct: 753 LPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPPAPAPFSAAPHLPP 801
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 21 LPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRHQP 76
+P G++H R S P F P+P VH P A+ + H P
Sbjct: 937 IPSTGHKGQVHPIHRAQRASSSHPPGTKGKFIPSPGHKGQVHPIPRAQRASSSHPP 992
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 44 PRPI-PECFSPTPLPSQ 59
PRP+ P+CF P+P P Q
Sbjct: 4817 PRPLRPDCFGPSPSPCQ 4833
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 72 PRHQPTDPKSIGPPEIEGTE 91
P+ +P P GPP IEG E
Sbjct: 187 PKEEPLQPAPPGPPSIEGDE 206
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 11 KSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSAR-- 68
++ ++ P Q + + G+ R SP S P SP P +PS R
Sbjct: 513 QTRRVSPTQAVRPSSTQGQSAPVGRTKSPSRSYTSPRQRRTSPNNRSPPPRRRSPSPRRP 572
Query: 69 TLAPRHQPTDPKSIGPP 85
+ +PR + T P PP
Sbjct: 573 SPSPRRRSTSPSRKSPP 589
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.5 bits (58), Expect = 5.3
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 54 TPLPSQPVHAAPSARTLAPRHQPTDP----KSIGPPEIEGTEXXXXXXXXXXXXXSRVHP 109
T PSQ +P T +P Q T P SIG P I T P
Sbjct: 702 TTSPSQQTSTSPPQTTTSPSQQTTSPPPSSPSIGQPWIPVTSTPTHADQRETDQQEGSKP 761
Query: 110 QSETTPTSLTNRAITL--LAIVTAIY 133
+ T + + + + L LAI+ A +
Sbjct: 762 DTLTVTSGVVSVILVLLILAIIVAAW 787
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 39 PDGSGPRPIPECFSPTPLPSQPVH-AAPSARTLAPRHQPTDPKS 81
P S +P+P P P+P+ P H P R P P P+S
Sbjct: 1077 PPPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKPTPAPR-PRS 1119
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.1 bits (57), Expect = 7.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 25 AEGGRLHVYSRVLSPDGSGPRPIPECFSPT----PLPSQPVH--AAPSARTLAPRHQPTD 78
A G +HV +VL G P P P +P P + P+ AAP T P T
Sbjct: 848 ASNGIIHVLDQVLPIVGPVP-PQPTTVAPPMTSGPTTTTPISTSAAPEITTANPGSPSTT 906
Query: 79 PKSIGPPE 86
KS+ P+
Sbjct: 907 TKSVTTPQ 914
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 26.6 bits (56), Expect = 9.3
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 10 SKSAQLVPAQQLPRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSAR- 68
S S + VP R R+ V R S + PR +P SP P+ P S+R
Sbjct: 281 SNSPRRVPVSPRQRSNSPRRVPVSPRQRS---NSPRRVP--VSPRQRPNLPRRVPLSSRQ 335
Query: 69 -TLAPRHQPTDPKSIGPPEIEG 89
+ +PR P P+ P + G
Sbjct: 336 QSNSPRRVPLSPRQQSRPVVRG 357
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 32 VYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSARTLAPRH--QPTDPK 80
+ + V P+G RP+P+ + +H P A+T + Q TDP+
Sbjct: 715 IVTDVWKPEGVEGRPVPDSYPVVICCCADIHRNPEAKTEKKNNDWQITDPR 765
>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 503
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 22 PRRAEGGRLHVYSRVLSPDGSGPRPIPECFSPTPLPSQPVHAAPSART 69
P G +H Y+ + P P P SPT P H P T
Sbjct: 328 PFLTPAGAIHYYNACIHTGVLTPAPTPTNVSPTGHEPPPKHTLPKLPT 375
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 46 PIPECFSPTPLPSQPVHAAPSARTLAPRHQPTDPKSI 82
P+P TP P +PV A S ++ R PT +++
Sbjct: 369 PVPARTDQTPRPERPVPAGASPQSRRRRPVPTPRRTV 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.129 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,047,103
Number of Sequences: 59808
Number of extensions: 230498
Number of successful extensions: 725
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 56
length of query: 156
length of database: 16,821,457
effective HSP length: 76
effective length of query: 80
effective length of database: 12,276,049
effective search space: 982083920
effective search space used: 982083920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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