GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000720-TA|BGIBMGA000720-PA|undefined
         (156 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   1.5  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   3.4  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative
          microtubule binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 19 QQLPRRAEGGRLHVYSRVLSPDGSGPRPI----PECFSPTPLPSQPVHAAPSARTLAPRH 74
          QQ  ++A G  +     +   + + P P     P  F+P+ + SQ     P+    +P  
Sbjct: 27 QQPSKQAGGAGVRAERSISGTESTKPVPTVLGGPNLFAPSAVSSQLQRPQPTVLAASPAP 86

Query: 75 QPT 77
          QP+
Sbjct: 87 QPS 89



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 44  PRPIPECFSPTPLPS-QPVHAAPSARTLAPRHQPTDP 79
           P+P     SP P PS  PV   PS+   AP  +P+ P
Sbjct: 75  PQPTVLAASPAPQPSLAPV--VPSSVVTAPPARPSQP 109


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 52   SPTPLPSQPVHAAPSARTLAPRHQ 75
            +P P+P +     PS RT+  RH+
Sbjct: 1115 APPPIPMRRRGLPPSPRTVRARHE 1138


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.129    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,636
Number of Sequences: 2123
Number of extensions: 6717
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 156
length of database: 516,269
effective HSP length: 59
effective length of query: 97
effective length of database: 391,012
effective search space: 37928164
effective search space used: 37928164
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)