Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000719-TA|BGIBMGA000719-PA|undefined
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   1.0  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    29   1.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   5.5  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   5.5  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   7.3  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 187 PLDWHADHIHTNFRDMYRR----LREHGFYVEVMGTPLTCIDTSLYGAL 231
           P+DW+    H N  D +      L+ +G+ V+ +  P++    S+Y  +
Sbjct: 253 PIDWNVSETHPNVLDKWNEFISLLKSNGYLVQEIQLPISLYANSVYSTM 301


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 341 ITAPLNDQGQQIISGEKPGAANGKTEVTQPLQVPILGLLQTDGDIHDY--SNDTVDKVPK 398
           ++A  ++   QI+S +   A NG TE     +VP++  +        Y  +   V++VP 
Sbjct: 542 VSAQADENSSQILSSKTSNAPNGTTETDFEDKVPLVDYISPFYRFKSYRFNQQFVERVPL 601

Query: 399 SGRLVVYGD 407
             R + Y +
Sbjct: 602 KYRSLTYSN 610


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 10  SFVLGQFLRKYEPQATLSPNYIDLTECQYMWPYCTQPLYYSSQPTIANV--TVINGLSVV 67
           S +  ++  + E   T SP Y+DLTE +  +       + S+ P    +  T ING S  
Sbjct: 265 SSLSAEYRSESEDHVTDSPAYVDLTELEGGFNQFNSTSFQSTSPLGLEIVETEINGSSTT 324

Query: 68  GNVK 71
            + K
Sbjct: 325 ADSK 328


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 227 LYGALLLVDPEDEYFPEEMATLKKAVDAGLSLIVFADWYNASLLRHVKFYDEN 279
           + G  LL+ P  E  P    T  + +  G +  ++ DWYN S++ H   YDEN
Sbjct: 800 MIGTALLISPALE--PN--TTYIQGIIPGDNDTIWYDWYNHSVINH--DYDEN 846


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 331 IHSFPEHGVLITAPLNDQ------GQQIISGEKPGAAN-GKTEVTQPLQVPILGLLQTDG 383
           IH+  +  +L++    D       G +++S    G+ N G  + T  +++P +     + 
Sbjct: 102 IHTHSQEAILLSTLFADSDHFSATGFEVLSYIPKGSKNNGFHKPTDKIKIPFINNTAHES 161

Query: 384 DIHDYSNDTVDKVPKSGRLVV 404
           D+HD   + ++  P +  ++V
Sbjct: 162 DLHDSLQEAINLYPDTCAVIV 182


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,350
Number of Sequences: 5004
Number of extensions: 100557
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 6
length of query: 460
length of database: 2,362,478
effective HSP length: 75
effective length of query: 385
effective length of database: 1,987,178
effective search space: 765063530
effective search space used: 765063530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)