Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000719-TA|BGIBMGA000719-PA|undefined
         (460 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical...    29   5.2  
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ...    29   5.2  

>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 231 LLLVDPEDEYFPEEMATLKKAVDAGLSLIVFADWYNASLLRHVKFYDENTRQWWIPETGG 290
           LL+ D + EY  E    + K + + L L+        S + H     +++RQ+ +  TGG
Sbjct: 881 LLIGDEDGEYLEENWVDVMKCMSS-LELVQLIGTGLNSAMSHDT---DSSRQYVMKATGG 936

Query: 291 -------SNVPALNDLLSMYQVALGDRVFEGSFKLGGHPMYY 325
                  S   AL +  S   V   DR+F GS +L    + Y
Sbjct: 937 IDEKTLHSLQDALGETSSQSVVVAIDRIFNGSARLSAEAIVY 978


>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
           protein Y6B3A.1a protein.
          Length = 1628

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 231 LLLVDPEDEYFPEEMATLKKAVDAGLSLIVFADWYNASLLRHVKFYDENTRQWWIPETGG 290
           LL+ D + EY  E    + K + + L L+        S + H     +++RQ+ +  TGG
Sbjct: 881 LLIGDEDGEYLEENWVDVMKCMSS-LELVQLIGTGLNSAMSHDT---DSSRQYVMKATGG 936

Query: 291 -------SNVPALNDLLSMYQVALGDRVFEGSFKLGGHPMYY 325
                  S   AL +  S   V   DR+F GS +L    + Y
Sbjct: 937 IDEKTLHSLQDALGETSSQSVVVAIDRIFNGSARLSAEAIVY 978


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,261
Number of Sequences: 27539
Number of extensions: 547320
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 2
length of query: 460
length of database: 12,573,161
effective HSP length: 84
effective length of query: 376
effective length of database: 10,259,885
effective search space: 3857716760
effective search space used: 3857716760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)