Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000719-TA|BGIBMGA000719-PA|undefined
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...   385   e-107
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    30   2.8  

>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score =  385 bits (948), Expect = e-107
 Identities = 179/428 (41%), Positives = 256/428 (59%), Gaps = 25/428 (5%)

Query: 15  QFLRKYEPQATLSPNYIDLTECQYMWPYCTQPLYYSSQPTIANVTVINGLSVVGNVKEV- 73
           + L+ Y P+A++ P+ +D  +C Y WP+C QPLY  + P I N T++NG+ V+G ++   
Sbjct: 471 EILKSYHPRASIFPSILDYNDCPYSWPFCRQPLYAGAMPIIFNTTILNGMGVIGYIESPP 530

Query: 74  SWHPHLPHGXXXXXXXXXXXXXWPWSGWLALSFTVREEGANFDGIIEGHVNVTIESHDDT 133
           +WHP    G             WPW+G+LAL   ++EEGA F G IEG+V V + S   +
Sbjct: 531 TWHPANEEGNLLSIHFKYPDVIWPWTGYLALHMQIKEEGAQFTGEIEGNVTVKVYSPPAS 590

Query: 134 GDRTIKNATLTLPIRARVIPVPVRSRRLLWDQFHSLRYPGGYFPRDDLRAKHDPLDWHAD 193
           G+   + +T +L ++ +VIP P R++R+LWDQFHS++YP GY PRD L  ++D LDWH D
Sbjct: 591 GESGPRRSTCSLQLKLKVIPTPPRAKRILWDQFHSIKYPPGYIPRDSLDVRNDILDWHGD 650

Query: 194 HIHTNFRDMYRRLREHGFYVEVMGTPLTCIDTSLYGALLLVDPEDEYFPEEMATLK-KAV 252
           H+HTNF  MY  LR+ G+Y+E +G+PLTC D   YG LL+VD ED+YFPEE+  L+   +
Sbjct: 651 HLHTNFHIMYNMLRDAGYYIETLGSPLTCFDAQQYGTLLMVDLEDDYFPEEIEKLRDDVI 710

Query: 253 DAGLSLIVFADWYNASLLRHVKFYDENTRQWWIPETGGSNVPALNDLLSMYQVALGDRVF 312
           + GL L+VFA+WYN   +  ++F+D+NTR WW P TGG+N+PALN+LL+ + +A GD++ 
Sbjct: 711 NTGLGLVVFAEWYNVDTMVKMRFFDDNTRSWWTPVTGGANIPALNNLLASFGIAFGDKIL 770

Query: 313 EGSFKLGGHPMYYASGTHIHSFPEHGVLITAPLNDQGQQIISGEKPGAANGKTEVTQPLQ 372
            G F + G    YASGT+I  FP  G L T PL D  +   SG        +     P  
Sbjct: 771 NGDFSIDGEQSRYASGTNIVRFPAGGFLHTFPLLDSSE---SGATQNLLLTEASKEDP-- 825

Query: 373 VPILGLLQTDGDIHDYSNDTVDKVPKSGRLVVYGDSSCLEGG-TARNCHWLLLAALQYAI 431
             +LGLL+                   GR+ VYGDS+CL+      NC+WLL   L ++ 
Sbjct: 826 -AVLGLLEIG----------------EGRVGVYGDSNCLDSSHMVTNCYWLLKKMLDFSS 868

Query: 432 VGHVPPAL 439
                P L
Sbjct: 869 SNIKDPVL 876


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 336 EHGVLITAPLNDQGQQIISGEKPGAANGKTEVTQPLQVPILGLLQTDGDIHDYSNDTVDK 395
           E GV  TA      Q+I SG+ P    GKT +T  + + + G  +  G+  +     +++
Sbjct: 324 EPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAG-TKYRGEFEERLKKLMEE 382

Query: 396 VPKSGRLVVYGD 407
           + +S  ++++ D
Sbjct: 383 IRQSDEIILFID 394


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,349
Number of Sequences: 28952
Number of extensions: 530530
Number of successful extensions: 1073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 3
length of query: 460
length of database: 12,070,560
effective HSP length: 84
effective length of query: 376
effective length of database: 9,638,592
effective search space: 3624110592
effective search space used: 3624110592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)