GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000719-TA|BGIBMGA000719-PA|undefined
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745...    30   3.4  
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    30   4.4  

>09_02_0339 +
           7452967-7453068,7453281-7453339,7453889-7454701,
           7455123-7455498,7455978-7456019
          Length = 463

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 218 TPLTCIDTSLYGALLLVD-PEDEYFPE 243
           +P T +DTS+ G L++VD PE+ ++P+
Sbjct: 77  SPTTTLDTSIAGELIMVDLPEELHYPQ 103


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 251 AVDAGLS-LIVFADWYNASLLRHVKFYDENTRQWWIPETGGS 291
           AV  G S ++VF  + +   L  +  YD   R W+ PE  GS
Sbjct: 33  AVSIGKSKVVVFGGFADKRFLSDIAVYDVENRIWYTPECNGS 74


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,298
Number of Sequences: 37544
Number of extensions: 686711
Number of successful extensions: 1273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 2
length of query: 460
length of database: 14,793,348
effective HSP length: 85
effective length of query: 375
effective length of database: 11,602,108
effective search space: 4350790500
effective search space used: 4350790500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)