GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000719-TA|BGIBMGA000719-PA|undefined
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)             372   e-103
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  

>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score =  372 bits (915), Expect = e-103
 Identities = 162/309 (52%), Positives = 214/309 (69%), Gaps = 17/309 (5%)

Query: 15  QFLRKYEPQATLSPNYIDLTECQYMWPYCTQPLYYSSQPTIANVTVINGLSVVGNVKEVS 74
           Q L  Y+PQA+LSP YIDLTEC YMWPYCTQP+YY S P I N T               
Sbjct: 408 QILNNYKPQASLSPAYIDLTECPYMWPYCTQPVYYGSIPIIVNPT--------------- 452

Query: 75  WHPHLP-HGXXXXXXXXXXXXXWPWSGWLALSFTVREEGANFDGIIEGHVNVTIESHDDT 133
           WH HL  +G             WPWSG+LA+S T  +  A+++G  +GH+ +T+ S    
Sbjct: 453 WHSHLEQNGEKLEIAISHSHTLWPWSGFLAVSITAAKRAASWEGYAQGHITLTVSSPPQE 512

Query: 134 GDRTIKNATLTLPIRARVIPVPVRSRRLLWDQFHSLRYPGGYFPRDDLRAKHDPLDWHAD 193
            +   + +T+ LPIR ++IP P RS+R+LWDQFH+LRYP GYFPRD+L+ ++DPLDW+ D
Sbjct: 513 LETEARISTIELPIRVKIIPTPPRSKRVLWDQFHNLRYPSGYFPRDNLKMRNDPLDWNGD 572

Query: 194 HIHTNFRDMYRRLREHGFYVEVMGTPLTCIDTSLYGALLLVDPEDEYFPEEMATLKKAV- 252
           HIHTNFRD+Y  LR+ G++VEV+G P TC D + YG LLLVD E+EYFPEE+  L++ V 
Sbjct: 573 HIHTNFRDLYMHLRKAGYFVEVLGVPFTCFDATQYGTLLLVDSEEEYFPEEITKLQRDVT 632

Query: 253 DAGLSLIVFADWYNASLLRHVKFYDENTRQWWIPETGGSNVPALNDLLSMYQVALGDRVF 312
             GLS+IV ADWYN  +++ +KFYDENTRQWW+P+TGG+N+PALN+L++ + +A  D VF
Sbjct: 633 QHGLSVIVIADWYNVDVMKKIKFYDENTRQWWMPDTGGANIPALNELMASWGMAFSDHVF 692

Query: 313 EGSFKLGGH 321
            G F LG H
Sbjct: 693 HGDFTLGDH 701



 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 24/120 (20%)

Query: 322  PMYYASGTHIHSFPEHGVLITAPLNDQGQQIISGEKPGAANGKTEVTQPLQVPILGLLQT 381
            P++Y+SGT + +FP  G++I   L DQ  +++SG          ++     VPILGL   
Sbjct: 1116 PVHYSSGTSLAAFPSSGLVIRRKLKDQAHEVVSG----------QIKLQDDVPILGLYSP 1165

Query: 382  DGDIHDYSNDTVDKVPKSGRLVVYGDSSCLEGG-TARNCHWLLLAALQYAIVGHVPPALK 440
            +   H             GR+ +YGDS+CL+     ++C WLL   L +     +PP L+
Sbjct: 1166 ESRTH-------------GRIALYGDSNCLDNAHMEKDCFWLLDQLLDFTTSRTIPPVLE 1212


>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 316 FKLGGHPMYYASGTHIHSFPEHGVLITAPLNDQGQQIISGEKPGAANGKTEVTQPL 371
           F+L   P+YY +  H  S P+  +  T P+  Q +  +S  +  + NG T +   L
Sbjct: 45  FRLTSAPLYYTNRLHSASQPQSNLTRTEPVLKQCRPFMSTIQCNSKNGATRIDNSL 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,375
Number of Sequences: 59808
Number of extensions: 734514
Number of successful extensions: 1210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 4
length of query: 460
length of database: 16,821,457
effective HSP length: 85
effective length of query: 375
effective length of database: 11,737,777
effective search space: 4401666375
effective search space used: 4401666375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)