Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   0.97 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   3.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   3.9  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
          protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 0.97
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 14 YVNEDLRLLCHIKDIDRAYQATLKVFKEYVPRVRT 48
          Y N  L+++    DI++   A ++  KE  P ++T
Sbjct: 64 YPNGTLQMIDEWGDIEKGNFAEVEALKEINPNLKT 98


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 44  PRVRTPSPINSSSEYEDNPLNYKMK 68
           P + TP P     +    PLN  +K
Sbjct: 247 PAIVTPGPKQELPDLNHKPLNLTIK 271


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 44  PRVRTPSPINSSSEYEDNPLNYKMK 68
           P + TP P     +    PLN  +K
Sbjct: 139 PAIVTPGPKQELPDLNHKPLNLTIK 163


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 3.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 30  RAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNK 71
           RAYQ  +  +K       +  P   +S  E   LN   KG +
Sbjct: 358 RAYQVAVLEYKGTQTNYPSYEPTYDNSRREGKQLNPLNKGTE 399


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,588
Number of Sequences: 317
Number of extensions: 681
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 82
length of database: 114,650
effective HSP length: 46
effective length of query: 36
effective length of database: 100,068
effective search space:  3602448
effective search space used:  3602448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)