Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23910.1 68418.m02808 kinesin motor protein-related                 27   1.2  
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo...    27   1.6  
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo...    27   1.6  
At5g25600.1 68418.m03046 hypothetical protein low similarity to ...    25   8.3  
At4g21940.1 68417.m03174 calcium-dependent protein kinase, putat...    25   8.3  
At3g62130.1 68416.m06981 epimerase-related contains weak similar...    25   8.3  
At3g60590.3 68416.m06778 expressed protein                             25   8.3  
At2g20950.1 68415.m02471 expressed protein                             25   8.3  
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote...    25   8.3  

>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 32  YQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSKG 82
           Y+ + +   + + + +   P+ S SE+++    +K     T DLP +  KG
Sbjct: 141 YEVSQETVYDLLDQEKRVVPVKSLSEFQNLYFGFKKSQKLTSDLPTRSHKG 191


>At4g33150.2 68417.m04723 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 21  LLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDL 75
           L  H+K    +Y+  L    EY+PR+R  +P     E +DN +   +   +T ++
Sbjct: 430 LPAHLKRACISYRGELTSLYEYIPRMRKSNP----EEAQDNIIANGVSSQRTFNI 480


>At4g33150.1 68417.m04722 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 21  LLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDL 75
           L  H+K    +Y+  L    EY+PR+R  +P     E +DN +   +   +T ++
Sbjct: 430 LPAHLKRACISYRGELTSLYEYIPRMRKSNP----EEAQDNIIANGVSSQRTFNI 480


>At5g25600.1 68418.m03046 hypothetical protein low similarity to
           zinc finger protein [Arabidopsis thaliana] GI:976277
          Length = 331

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 48  TPSPINSSSEYEDNPLNYKMKGNKTIDL-PLKKSK 81
           TP+ IN  S Y     + + KG K IDL P KK K
Sbjct: 280 TPTAINDQSRYACGESSKRRKG-KQIDLTPDKKKK 313


>At4g21940.1 68417.m03174 calcium-dependent protein kinase,
          putative / CDPK, putative similar to calcium-dependent
          protein kinase [Nicotiana tabacum]
          gi|3283996|gb|AAC25423
          Length = 554

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 36 LKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLK 78
          LK  K   P++ T +  N   + E  P+N +++    +  PLK
Sbjct: 38 LKPQKPPSPQIPTTTQSNHHHQQESKPVNQQIEKKHVLTQPLK 80


>At3g62130.1 68416.m06981 epimerase-related contains weak similarity
           to isopenicillin N epimerase (Swiss-Prot:P18549)
           [Streptomyces clavuligerus]
          Length = 454

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 13  RYVNEDLRLL--CHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSE 57
           +Y  ED  ++  C  + + ++ QA +         VR P P+NS+ E
Sbjct: 130 KYKKEDTVVMFHCAFQSVKKSIQAYVSRVGGSTVEVRLPFPVNSNEE 176


>At3g60590.3 68416.m06778 expressed protein 
          Length = 404

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 12  LRYVNEDLRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNK 71
           LR+  + L+L      + +   +  K      PRVR  +P N   + +    N++ +  +
Sbjct: 61  LRFAEQSLKLFLETSMVSQGMVSLTKSLCTMTPRVRLKNP-NMLQKLKTGSCNFRFRNLR 119

Query: 72  TIDLP 76
            +  P
Sbjct: 120 VLCTP 124


>At2g20950.1 68415.m02471 expressed protein
          Length = 520

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 29  DRAYQATLKVFKEYVPRVRTPSPINSSSEYED-NPLNYKMKGNKT 72
           +R Y+A   V   +  R R+P+P N+     D +   Y+ +GN T
Sbjct: 135 ERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVT 179


>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 744

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 48  TPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSKG 82
           TP+P NSS+E  +     K+K +  I + L    G
Sbjct: 312 TPTPTNSSTESTNQTAKSKLKPSTIIGITLADIAG 346


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,912
Number of Sequences: 28952
Number of extensions: 73074
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 9
length of query: 82
length of database: 12,070,560
effective HSP length: 61
effective length of query: 21
effective length of database: 10,304,488
effective search space: 216394248
effective search space used: 216394248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)