GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    27   0.43 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   0.57 
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    26   0.57 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   0.75 
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    24   3.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    24   3.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   3.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    24   3.0  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    23   4.0  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    23   5.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    23   5.3  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    23   5.3  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    23   5.3  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    23   7.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    23   7.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    23   7.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    22   9.3  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    22   9.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    22   9.3  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein
          Mmf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 30 RAYQATLK-VFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTI 73
          R++Q +L+ V + ++ ++ T +PINS       P N  +K N  I
Sbjct: 19 RSFQQSLRPVPRFFIHKMSTKTPINSPKLSSAGPYNQAIKANGVI 63


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 53  NSSSEYEDNPLNYKMKGNKTIDLP-LKKSKG 82
           +S+S Y   PL+ K+ G K+ DL  L K+KG
Sbjct: 418 HSTSNYSKVPLSAKLTGEKSDDLSNLLKNKG 448


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 8/29 (27%), Positives = 21/29 (72%)

Query: 1  MSSSELTLGVGLRYVNEDLRLLCHIKDID 29
          ++ +E +LG+  +Y  E+++ +C +++ID
Sbjct: 40 LARAEASLGIIPKYAGEEIQRVCKVENID 68


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 37  KVFKEYVPRVRTPSPINSSSEYEDNP 62
           K+F    PR R  S     ++Y+DNP
Sbjct: 181 KIFHYLSPRDRNKSSYGKKAQYQDNP 206


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 23  CHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLK 78
           C I D+D+      KV    +P+VR P P + +S+     L  +M+  K +  PL+
Sbjct: 184 CPIIDVDQK-----KVIAIDIPKVRRPIPQDVNSDNNLKKLEQEMEAMKMLK-PLR 233


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 16  NEDLRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPIN 53
           NE+  LL +++D    Y+   K FK    ++R   P N
Sbjct: 640 NENQTLLKNLEDSTARYEHLQKSFKNVFNQLRKQQPSN 677


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 36  LKVFKEYVPRVRTPSPIN 53
           L V   ++P +R+PSPIN
Sbjct: 520 LCVTSAFMPAIRSPSPIN 537


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 25  IKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDN 61
           ++D+D  YQ  ++     + ++R  SP++ + + E +
Sbjct: 352 LRDMDARYQRHMQTVVNSMQKMRVTSPVDHNEQPESS 388


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 43 VPRVRTPSPINSSSEYEDNPLNY 65
          VP+V + + ++ S + ED P  Y
Sbjct: 73 VPKVESKTQVSQSQDEEDQPQEY 95


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 21  LLCHIKDIDRAYQATLKVFKEYVPRVRT 48
           +LCH +++    +     F +Y+P VRT
Sbjct: 124 VLCHTRELAFQIKNEYARFSKYLPDVRT 151


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 46  VRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKS 80
           ++ P+ ++ S +Y ++  N+   G   +DL LK++
Sbjct: 245 IKFPNRLDYSEKYLNSLWNFYKSGGLALDLLLKRT 279


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 46  VRTPSPINSSSEYEDNPLNYKMK 68
           V  PS   S+  Y+  PLNY ++
Sbjct: 154 VSAPSRHQSTYSYKGGPLNYNLR 176


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 13  RYVNEDLRLLCHIKDIDRAYQATLKVFKEY 42
           R + E+ +  C  ++I+ A   + K FKEY
Sbjct: 239 RKIMEEYKGKCDSENIEEASSNSWKAFKEY 268


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 46  VRTPSPINSSSEYEDNPLNYKMK 68
           + T  PIN++ +    P NY +K
Sbjct: 206 ILTKRPINANGDLRYTPSNYSLK 228


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 35  TLKVFKEYVPRVRTPSPINSSSEYED 60
           T KV+K++   ++  SP NSS+  E+
Sbjct: 871 TSKVYKQHGNIMKVASPENSSNSMEN 896


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 50  SPINSSSEYEDNPLNYKMKGNKT 72
           +P++S S+Y + P NY +   K+
Sbjct: 178 APLSSISQYANMPENYALNTKKS 200


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 52   INSSSEYEDNPLNYKMKGNKTIDL 75
            +N+SSE E      K  GNKT +L
Sbjct: 1775 LNASSEKEARDYLNKFAGNKTDEL 1798


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 52  INSSSEYEDNPLNYKMKGNK 71
           +N    YE+ PL  K++G K
Sbjct: 204 LNCDVTYEEGPLTKKLRGPK 223


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 17  EDLRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYK 66
           ED+R L  ++    A Q   +   +     R  SP NSSS+  +  +N++
Sbjct: 775 EDIRRLA-VESAQEAVQKA-REHSQLFDANRQQSPNNSSSDMNEGEMNFQ 822


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,875
Number of Sequences: 5004
Number of extensions: 15434
Number of successful extensions: 36
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 19
length of query: 82
length of database: 2,362,478
effective HSP length: 60
effective length of query: 22
effective length of database: 2,062,238
effective search space: 45369236
effective search space used: 45369236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)