GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0495 - 17803201-17803571,17803982-17804063                       29   0.62 
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    27   2.5  
01_06_0240 + 27794741-27795466                                         27   2.5  
10_08_0522 + 18512213-18512601,18513677-18513779,18513924-185139...    25   5.8  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     25   5.8  
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504...    25   7.6  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    25   7.6  

>08_02_0495 - 17803201-17803571,17803982-17804063
          Length = 150

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 27  DIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSKG 82
           ++D+   +T+K++K  +  +   SP+  SS+YE +P +YK    + I  P+   KG
Sbjct: 49  NLDKGQNSTIKIWKTAIS-LPGISPL--SSKYEPSPEDYKNPLLRFISSPIASLKG 101


>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
            20164566-20166466,20166557-20166650,20166953-20167440,
            20167919-20168599,20168870-20168944,20170148-20170210,
            20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 14   YVNEDLRLLCHIKD---IDRAYQATLKVFKEYVPRVRTPSPINSSSE 57
            +V+ D   +  +KD   I+R  Q  ++  KE+  R+R P   +SSS+
Sbjct: 1651 WVDTDTIFIDGVKDPLAIERWQQQAMEADKEFYSRIRIPDEEDSSSQ 1697


>01_06_0240 + 27794741-27795466
          Length = 241

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 43  VPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSKG 82
           VP   +P     ++  +  P NY++   +T  LPL+K KG
Sbjct: 101 VPSAISPDRRRRTALTQGEPPNYEIGWKRTKKLPLEKPKG 140


>10_08_0522 +
           18512213-18512601,18513677-18513779,18513924-18513975,
           18514662-18514741,18514980-18515054,18515783-18515899,
           18516427-18516471,18516991-18517089,18517327-18517347
          Length = 326

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 3   SSELTLGVGLRYVNEDLRLLCHIKDID-RAYQATLKVFKE 41
           SSEL     + Y+N D RL    KD+D RA +    +F E
Sbjct: 190 SSELEEEYTITYINSDHRLPTASKDVDLRAVKVPPVIFLE 229


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 43  VPRVRTPSPINSSSEYEDNPLNYKMKG 69
           +P +R  S +N+S+ YED P N K++G
Sbjct: 662 LPTIRHLSILNNSAHYED-PSNDKVEG 687


>06_03_0559 +
           22148773-22149210,22149478-22149684,22150065-22150471,
           22150655-22151472,22151564-22151674,22151846-22152015
          Length = 716

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 49  PSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSK 81
           P+PI++SS+            + T+  P+KKSK
Sbjct: 231 PTPISTSSQRSQKGKRPLSSNSSTLSSPVKKSK 263


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 37  KVFKEYVPRVRTPSPINSSSEYEDNPLNYKM 67
           K+ KEY+  V T   +  +S+ +D PL  K+
Sbjct: 189 KLIKEYIEEVSTQLKMVCNSDSDDLPLEEKL 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,917
Number of Sequences: 37544
Number of extensions: 80840
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 14,793,348
effective HSP length: 61
effective length of query: 21
effective length of database: 12,503,164
effective search space: 262566444
effective search space used: 262566444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)